View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19786_high_50 (Length: 368)
Name: NF19786_high_50
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_high_50 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 19 - 362
Target Start/End: Complemental strand, 35520253 - 35519910
Alignment:
| Q |
19 |
gtaatggagttgggtatcgatgattttgtaaaggttggtttatcagctgccgaagccaatgaattgaaggaagtgttgctgtcactgccattgtcctcac |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35520253 |
gtaatggagttgggtattgatgattttgtaaaggttggtttatcagctgccgaagccaatgaattgaaggaagtgttgctgtcactgccattgtcctcac |
35520154 |
T |
|
| Q |
119 |
tctcctcagctgacacatggcgtcacctcgtcagccgtagagtcctcaaaccatcaaaccctcaccccttgcatcagcttctttattataccatctataa |
218 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| | |||||||||||||||| ||||||| ||||||||||||||||| || |||||||||||||| |
|
|
| T |
35520153 |
tctcctcagctgacacatggcgccacctcgtcagccgcaaagtcctcaaaccatcataccctcatcccttgcatcagcttctctactataccatctataa |
35520054 |
T |
|
| Q |
219 |
tgatcatcaccactcttcttcttctcctcctctttattggtttccttctctgtaagtcactctaattgttattattcatatgtgctttttccttcttcta |
318 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35520053 |
tgatcatcatcactcctcttcttctcctcctctttattggtttccttctctgtaagtcactctaattgttattattcatatgtgctttttccttcttcta |
35519954 |
T |
|
| Q |
319 |
ggattatgaagtattcatactgataatattagtcacaccctatg |
362 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35519953 |
gtattatgaagtattcatactgataatattagtcacaccctatg |
35519910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 20 - 282
Target Start/End: Original strand, 35710634 - 35710899
Alignment:
| Q |
20 |
taatggagttgggtatcgatgattttgtaaaggttggtttatcagctgccgaagccaatgaattgaaggaagtgttgctgtcactgccattgtcctcact |
119 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| | |||||||||| || | ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
35710634 |
taatggagttgggtgtcgacgattttgtaaaagctggtttatcacctactgaagccaatgaattgaaggaagttttgctgtcactgccattgtcctcact |
35710733 |
T |
|
| Q |
120 |
ctcctcagctgacacatggcgtcacctcgtcagccgtagagtcctcaaaccatcaaaccctcaccccttgcatcagcttctttattataccatctataat |
219 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| | |||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35710734 |
ctcctcagctgacacatggcgccacctcgtcagccgcaaagtcctcaaaccatcataccctcatcccttgcatcagcttctctattataccatctataat |
35710833 |
T |
|
| Q |
220 |
gatcatcacca---ctcttcttcttctcctcctctttattggtttccttctctgtaagtcactcta |
282 |
Q |
| |
|
||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35710834 |
catcatcatcactcctcttcttctcctcctcctctttattggtttccttctctgtaagtcactcta |
35710899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University