View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_high_51 (Length: 368)
Name: NF19786_high_51
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_high_51 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 352
Target Start/End: Original strand, 28036167 - 28036503
Alignment:
| Q |
16 |
ttagggacattggtgttggtgttgctagccataactagagaatgtaaggaggacatgttttgtttgtttgtaatagaatacttactatgttcttgaatgg |
115 |
Q |
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| T |
28036167 |
ttagggacattggtgttggtgttgctagccataacaagagaatgtaaggaggacatgttttgtttgttggtaatagaatacttactatgttcttgaatgg |
28036266 |
T |
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| Q |
116 |
tttcaaaagcaagatgactaacaagcaaacgaatagcattattctgagcaaaatgatcttgacattttggatgatgtgctgcaagttctgaaatagccca |
215 |
Q |
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| T |
28036267 |
tttcaaaagcaagatgactaacaagcaaacgaatagcattattctgagcaaaatgatcttgacattttggatgatgtgctgcaagttctgaaatagccca |
28036366 |
T |
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| Q |
216 |
agcaacaactatttgaaccttcatgtgaccatctttgagtactttcgcaaaaaccgaacaaacaccacaattcacaatatgttcaacgctttctggatct |
315 |
Q |
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| T |
28036367 |
agcaacaactatttgaaccttcatgtgaccatctttgagtactttcgcaaaaaccgaacaaacaccacaattcacaatatgttcaacactttctggatct |
28036466 |
T |
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| Q |
316 |
ctaccaagtaatccaattgctcttgcagcgttttctt |
352 |
Q |
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| T |
28036467 |
ctaccaagtaatccaattgctcttgcagcgttttctt |
28036503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 87 - 282
Target Start/End: Complemental strand, 8756910 - 8756715
Alignment:
| Q |
87 |
aatagaatacttactatgttcttgaatggtttcaaaagcaagatgactaacaagcaaacgaatagcattattctgagcaaaatgatcttgacattttgga |
186 |
Q |
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| T |
8756910 |
aatagcatacttactatgttcctcaacagtttcaaaagctaaatgaccaacaagcaacctaataatattatgctgagcaaaaagttcctgacatttagga |
8756811 |
T |
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| Q |
187 |
tgatgtgctgcaagttctgaaatagcccaagcaacaactatttgaaccttcatgtgaccatctttgagtactttcgcaaaaaccgaacaaacacca |
282 |
Q |
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| T |
8756810 |
taattagcagcaagttcagaaacagcccaagcaacaacaccttgaactttcataggaccttctttaagaattttcgcaaaaacagaacaaacacca |
8756715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 282
Target Start/End: Original strand, 32031502 - 32031687
Alignment:
| Q |
97 |
ttactatgttcttgaatggtttcaaaagcaagatgactaacaagcaaacgaatagcattattctgagcaaaatgatcttgacattttggatgatgtgctg |
196 |
Q |
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| T |
32031502 |
ttactatgttcttgaacagtttcaaaagcaatgtgactcacaagcaacctaacaatattatgctgagcaaaaacatcttgacatttaggatacttagaaa |
32031601 |
T |
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| Q |
197 |
caagttctgaaatagcccaagcaacaactatttgaaccttcatgtgaccatctttgagtactttcgcaaaaaccgaacaaacacca |
282 |
Q |
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| T |
32031602 |
caagttcagaaacagcccaagctacaacagcttgaactttcataggaccttctttaagaatcttcgcgaaaacagaacaaacacca |
32031687 |
T |
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