View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_high_53 (Length: 355)
Name: NF19786_high_53
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_high_53 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 159 - 338
Target Start/End: Original strand, 1172504 - 1172683
Alignment:
| Q |
159 |
aaacaatgtccagacacagaacctgcaaaatagattttgaactttagtcattggtagggtttagggtttaggaaagggagttatataaagggtgagacga |
258 |
Q |
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| T |
1172504 |
aaacaatgtccagacacagaacctgcaaaatagattttgaactttagtcattggtagggtttagggttttggaaagggagttatataaagggtgagatga |
1172603 |
T |
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| Q |
259 |
gaattgagaatctaaagtgtacacctaaaaactggtccaattaatgacaacctattacacaatggattagcaaatcaact |
338 |
Q |
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| T |
1172604 |
gaattgagagtctaaagtgtacccctaaaaactggtccaattaatgacaacctattacacaatggattagcaaatcaact |
1172683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 1172319 - 1172479
Alignment:
| Q |
1 |
tccacctccctttcttataggaagagatagttcatgtttgtgatcattccgactttccatgaacccatcgttttggttcaaagcttgagcacttgagatc |
100 |
Q |
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| T |
1172319 |
tccacctccctttcttatagtaagagatagttcatgtttgtgatcattccgactttccacgaacccatcgttttggttcaaagcttgagcacttgagatc |
1172418 |
T |
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| Q |
101 |
atcaataggaagagtacagaaagtattatcttcatgctaggcctaagggattctttgcaaa |
161 |
Q |
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| T |
1172419 |
atcaataggaagagtacagaaagtattatcttcatgctaggcctaagggattctttgcaaa |
1172479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 1164965 - 1165104
Alignment:
| Q |
5 |
cctccctttcttataggaagagatagttcatgtttgtgatcattccgactttccatgaacccatcgttttggttcaaagcttgagcacttgagatcatca |
104 |
Q |
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| T |
1164965 |
cctccctttcttatagtatgggatagttcatgtttgtgatcattccgactttccgcgaacccatcatggtggttcaaagcttgagcacttgagatcatca |
1165064 |
T |
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| Q |
105 |
ataggaagagtacagaaagtattatcttcatgctaggcct |
144 |
Q |
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| T |
1165065 |
atatgaacagtacagaaagtattaccttcatggtaggcct |
1165104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 227 - 338
Target Start/End: Original strand, 1181795 - 1181903
Alignment:
| Q |
227 |
taggaaagggagttatataaagggtgagacgagaattgagaatctaaagtgtacacctaaaaactggtccaattaatgacaacctattac-acaatggat |
325 |
Q |
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| T |
1181795 |
taggaaagggagatatataaaaggtgagaagagaactgagaatctaatgtggagccctaaaaacgggtcc----aatgacgacctattactacaatggat |
1181890 |
T |
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| Q |
326 |
tagcaaatcaact |
338 |
Q |
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| T |
1181891 |
tagcaaatcaact |
1181903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 1160311 - 1160387
Alignment:
| Q |
5 |
cctccctttcttataggaagagatagttcatgtttgtgatcattccgactttccatgaacccatcgttttggttcaa |
81 |
Q |
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|||||||||||||||| || |||||||||||||||||| |||| ||||||||| |||||||| || |||||||| |
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| T |
1160311 |
cctccctttcttatagtaacagatagttcatgtttgtgtgcattttgactttccacaaacccatctttgtggttcaa |
1160387 |
T |
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