View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_high_55 (Length: 344)
Name: NF19786_high_55
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_high_55 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 10 - 344
Target Start/End: Original strand, 43307469 - 43307803
Alignment:
| Q |
10 |
attatactaaaactctaacacaacaaaacctcatccacaaatacaaccaaaaggatgtatccctaagattaccaaatatattaaacatttttccaaaaag |
109 |
Q |
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| T |
43307469 |
attatactaaaactctaacacaacaaaacctcatccacaaatacaaccaaaaggatgtatccctaagattaccaaatatattaaacatttttccaaaaag |
43307568 |
T |
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| Q |
110 |
ccaaattgtgatcccaccacttcttttacttattcttaagggttgcaactgccaaaagaggagtctttctatgcatggttaaaccaaatgtttcagacat |
209 |
Q |
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| T |
43307569 |
ccaaattgtgatcccaccacctcttttacttattcttaagggttgcaactgccaaaagaggagtctttctatgcatggttaaaccaaatgtttcagacat |
43307668 |
T |
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| Q |
210 |
gtccaaggtttccaatccaggtaattcccaattaaattgatgtacaaggttggctaacacaagttcattggcaaccacagcataaactatcccaggacaa |
309 |
Q |
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| T |
43307669 |
gtccaaggtttccaatccaggtaattcccaattaaattgatgtacaaggttggctaacacaagttcattggcaaccatagcataaactatcccaggacaa |
43307768 |
T |
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| Q |
310 |
ccccttctccctgctccaaatggaatcaaatggaa |
344 |
Q |
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| T |
43307769 |
ccccttctccctgctccaaatggaatcaaatggaa |
43307803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 149 - 337
Target Start/End: Original strand, 43267008 - 43267199
Alignment:
| Q |
149 |
gggttgcaactgccaaaagaggagtctttctatgcatggttaaaccaaatgtttcagacatgtccaaggtttc--caat-ccaggtaattcccaattaaa |
245 |
Q |
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| T |
43267008 |
gggttgcaattgccataagaggaatctttctatgcactgtgaagccaaacgattcagacatgtccaatccttcagcagcaccaggtaattcccagttaaa |
43267107 |
T |
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| Q |
246 |
ttgatgtacaaggttggctaacacaagttcattggcaaccacagcataaactatcccaggacaaccccttctccctgctccaaatggaatca |
337 |
Q |
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| T |
43267108 |
ttgatgtacaaggtttgccaacacaagatcattgacagccgtagcataaactgccccaggacaaccccttctgccagctccaaatggaatca |
43267199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 149 - 337
Target Start/End: Original strand, 43286809 - 43287000
Alignment:
| Q |
149 |
gggttgcaactgccaaaagaggagtctttctatgcatggttaaaccaaatgtttcagacatgtccaaggtttc--caat-ccaggtaattcccaattaaa |
245 |
Q |
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| T |
43286809 |
gggttgcaattgccataagaggaatctttctatgcactgtgaagccaaacgattcagacatgtccaatccttcagcagcaccaggtaattcccagttaaa |
43286908 |
T |
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| Q |
246 |
ttgatgtacaaggttggctaacacaagttcattggcaaccacagcataaactatcccaggacaaccccttctccctgctccaaatggaatca |
337 |
Q |
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| T |
43286909 |
ttgatgtacaaggtttgccaacacaagatcattgacagccgtagcataaactgccccaggacaaccccttctgccagctccaaatggaatca |
43287000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 226 - 338
Target Start/End: Original strand, 43274353 - 43274465
Alignment:
| Q |
226 |
ccaggtaattcccaattaaattgatgtacaaggttggctaacacaagttcattggcaaccacagcataaactatcccaggacaaccccttctccctgctc |
325 |
Q |
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| T |
43274353 |
ccaggtaattcccaatcaaattgatgtataagattggctaacacaatttcattggcagctatagcatacactactccagggcaaccccttctccctgctc |
43274452 |
T |
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| Q |
326 |
caaatggaatcaa |
338 |
Q |
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|||||||| |||| |
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| T |
43274453 |
caaatggagtcaa |
43274465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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