View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19786_high_60 (Length: 326)
Name: NF19786_high_60
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_high_60 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 7764952 - 7765243
Alignment:
| Q |
13 |
atgaacacaaataaaatgttgtttctgttgcatgtaagcaattaaaggcgttgaaatagcaatttgctaaatgttttgttaaacctttgtagcgataaga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7764952 |
atgaacacaaataaaatgttgtttctgttgcatgtaagcaattaaaggcgttgaaatagcaatttgctaaatgttttgttaaacctatgtagcgataaga |
7765051 |
T |
|
| Q |
113 |
gcccaagcccactactctctctaccactgcgtgtagatattttctttaccattgtgtgcgtgtcgtgtctttcgctttcattttgtcttaaccgtttg-- |
210 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7765052 |
gcccaagcccaccactctctctaccactgcgtgtagatattttctttaccattctgtg-----cgtgtctttcgctatcattttgtcttaaccgtttgaa |
7765146 |
T |
|
| Q |
211 |
aaaattagggtttactcaaagcagagagtgaagaataacgctgctcaaagcatggattttcctcaagaactgatcattcaatttctgttgaggttac |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7765147 |
aaaattagggtttactcaaagcagagagtgaagaataacgctgctcaaagcatggatcttcctcaagaactgatcattcaatttctgttgaggttac |
7765243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 46 - 305
Target Start/End: Original strand, 7785807 - 7786063
Alignment:
| Q |
46 |
gtaagcaattaaaggcgttgaaatagcaatttgctaaatgttttgttaaacctttgtagcgataagagcccaagcccactactctctctaccactgcgtg |
145 |
Q |
| |
|
||||||||||||| | ||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| | ||||| |
|
|
| T |
7785807 |
gtaagcaattaaacgtgtttaaatagcaatttgctaaatgttttgttaaacctttctaacgatatgagcccaagcccactactctctctactatagcgtg |
7785906 |
T |
|
| Q |
146 |
tagatattttctttaccattgtgtgcgtgtcgtgtctttcgctttcattttgtcttaaccgtttg-aaaattagggtttactcaaagcagagagtgaaga |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||| ||| |
|
|
| T |
7785907 |
tagatattttctttaccattgtgtgcgtgtcgtgtctttcgctttcattttgtcttagccgtttgaaaaattagggtttactcaaagca---agtg-aga |
7786002 |
T |
|
| Q |
245 |
ataacgctgctcaaagcatggattttcctcaagaactgatcattcaatttctgttgaggtt |
305 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
7786003 |
ataacgttgctcaaagcatggatcttcctcaagaactgatccttcaaactctgttgaggtt |
7786063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University