View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19786_high_64 (Length: 300)
Name: NF19786_high_64
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_high_64 |
 | |
|
| [»] scaffold0606 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0606 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0606
Description:
Target: scaffold0606; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 4214 - 3947
Alignment:
| Q |
18 |
tgtgtacttgtagagagtacaatagtagacaccctagtagcaatgatgccgagtataacactaggctttggtattctgtcaaagtgatgatttgtaaatg |
117 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4214 |
tgtgtacttgtaaagagtacaatagtaaacaccctagtagcgatgatgctgagtagaacactaggctttggtattctgtcaaagtgatgatttgtaaatg |
4115 |
T |
|
| Q |
118 |
atctcagagtctatattagtttataaattatggatgcaatatgagaacaatgaaatgtctttaaggatcacaatatcataaaatttgattttgattcaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4114 |
atctcagagtctatattagtttataaattatggatgcaatatgagaacaatgaaatgtctttaaggatcacaatatcataaaatttgattttgattcacc |
4015 |
T |
|
| Q |
218 |
tattaacatatgcataatgacttatctaaaatatggtagttctgatgatcttgatggtgcaattttat |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
4014 |
tattaacatatgcataatgacttatctaaaatatggtagtcctgacgatcttgatggtgcaattttat |
3947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 20649259 - 20649303
Alignment:
| Q |
191 |
tatcataaaatttgattttgattcaactattaacatatgcataat |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
20649259 |
tatcataaaatttgattttgattcaactattaaaatatgtataat |
20649303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University