View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_high_68 (Length: 286)
Name: NF19786_high_68
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_high_68 |
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Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 2361141 - 2361403
Alignment:
| Q |
18 |
taaacagttaaattattcacatttacacatacaataaatttccatgataataatagttttcatttgcataataattgttttcatgctacaaactcaaatc |
117 |
Q |
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| T |
2361141 |
taaacagttaaattattcacatttacacatacaataaatttccatgataataatagttttcatttgcataataattgttttcatgctacaaactcaaatc |
2361240 |
T |
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| Q |
118 |
ttctatccatccccactaggccatcggagcttttccttacctaataaaatggatttggttcttgatttcctatctagtgtcacttcagtagcactcgttt |
217 |
Q |
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| T |
2361241 |
ttctatccatccccactaggccatcggagcttttccttacctaataaaatggatttggttcttgatttcctatctagtgtcacttcagtagcactctttt |
2361340 |
T |
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| Q |
218 |
caatattcttgttttcttttttgtttctttatcgttcctacaaagtttcccatagcaaagagg |
280 |
Q |
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| T |
2361341 |
caatattcttgttttcttttttgtttctttatcgttcctacaaagtttcccatagcaaagagg |
2361403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 147 - 280
Target Start/End: Original strand, 2365874 - 2366007
Alignment:
| Q |
147 |
cttttccttacctaataaaatggatttggttcttgatttcctatctagtgtcacttcagtagcactcgtttcaatattcttgttttcttttttgtttctt |
246 |
Q |
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| T |
2365874 |
cttttccttacctaataaaatggatttggttcttgatttcctaactagtgccactacactagcactattttcaatactcttgttttattgtttgtttctt |
2365973 |
T |
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| Q |
247 |
tatcgttcctacaaagtttcccatagcaaagagg |
280 |
Q |
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| T |
2365974 |
tatcgttcctacaaagtttctcatagcaaagagg |
2366007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 280
Target Start/End: Original strand, 4303043 - 4303165
Alignment:
| Q |
158 |
ctaataaaatggatttggttcttgatttcctatctagtgtcacttcagtagcactcgtttcaatattcttgttttcttttttgtttctttatcgttccta |
257 |
Q |
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||||| |||||||||||||| |||||| |||| ||||| || || ||||| || |||| ||||||||||||| | ||||||||||||||||||| | |
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| T |
4303043 |
ctaattaaatggatttggtttttgattccctaactagtaccatcacattagcattcttttctatattcttgttttatattttgtttctttatcgttcttc |
4303142 |
T |
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| Q |
258 |
caaagtttcccatagcaaagagg |
280 |
Q |
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||||| ||| || ||||||||| |
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| T |
4303143 |
caaagcttctcaatgcaaagagg |
4303165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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