View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_high_7 (Length: 730)
Name: NF19786_high_7
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Complemental strand, 39641366 - 39640846
Alignment:
| Q |
1 |
gtttgttttcgtcctttgcagtgctgcagcttagctgttagatctaatagtgcattgaatctgatggttttgtaatagttggattgtgcatggtgctgca |
100 |
Q |
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| T |
39641366 |
gtttgttttcgtcctttgcagtgctgcagcttagctgttagatctaatagtgcattgaatctgatggttttgtaatagttggattgtgcatggtgctgca |
39641267 |
T |
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| Q |
101 |
taggattttagttagttgatttatcttgtacacaaaccctcatcctttctcttatgttacactgtttttaccaactctagacgacttgagcaacggcggc |
200 |
Q |
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| T |
39641266 |
taggattttagttagttgatttatcttgtacacaaaccctcatcctttctcttatgttacactgtttttaccaactctagacgacttgagcaacggcggc |
39641167 |
T |
|
| Q |
201 |
tctagtctagtaagcaagtagttctcatcagcaagtagttcaaagtttggatattgatttttgtgcatgtaaaatgcctagttgagaggagaaaaccact |
300 |
Q |
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| T |
39641166 |
tctagtctagtaagcaagta-----------------gttcaaagtttggatattgatttttgtgcatgtaaaatgcctagttgagaggagaaaaccact |
39641084 |
T |
|
| Q |
301 |
ataattccctgagattctttgaaaacagtctctattgacaatgcaaaatactacactccttatgcaactcatgggccnnnnnnncattacacgtgatttg |
400 |
Q |
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| T |
39641083 |
ataatgccctgagattctttgaaaacagtctctattgacaatgcaaaatactacactccttatgcaactcatgggccaaaaaaacattacacgtgatttg |
39640984 |
T |
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| Q |
401 |
tgttaagtgatctaccacgtttacggactattatgatcaatctcctattttggtgttaaccctttgannnnnnnaggagaaataccattgacaaatctag |
500 |
Q |
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| T |
39640983 |
tgttaagtgatctaccacgtttacggactattatgatcaatctccaattttggtgttaaccctttga-ttttttaggagaaataccattgacaaatcttg |
39640885 |
T |
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| Q |
501 |
agttcgctcaggaaataagaaaaatttgatcaaatatta |
539 |
Q |
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| T |
39640884 |
agttcactcaggaaataagaaaaatttgatcaaatatta |
39640846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 537 - 713
Target Start/End: Complemental strand, 39640758 - 39640582
Alignment:
| Q |
537 |
ttagcaactaacccctacctagcggcatttggaccttaacgggatcggcctatggtcaactcaaaactggttcataatacagtaatgatctttaattttc |
636 |
Q |
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| T |
39640758 |
ttagcaactaacccctacctagcggcatttggaccttaacggaatcggcctatggtcaactcaaaactggttcataatacagtaatgatctttaattttc |
39640659 |
T |
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| Q |
637 |
aaggggaatattggttaatatttttagtttggacaaaatttagatgtagcgatatagttagctgttcttctcacaaa |
713 |
Q |
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| T |
39640658 |
aaggggaatattggttaatattgttagtttggacaaaatttagatgtagcgatataggtagctgttcttctcacaaa |
39640582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 387 - 451
Target Start/End: Original strand, 39681227 - 39681291
Alignment:
| Q |
387 |
ttacacgtgatttgtgttaagtgatctaccacgtttacggactattatgatcaatctcctatttt |
451 |
Q |
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| T |
39681227 |
ttacacatgatttgtgttaactgatttaccacgtttgtggactattttgatcaaacttctatttt |
39681291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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