View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_high_78 (Length: 266)
Name: NF19786_high_78
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_high_78 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 13185074 - 13185268
Alignment:
| Q |
19 |
atgagttttcttaaataatacatacaaataccccttctaacttaaattaaacactaacctccttttagtttgttattaaattgacaaacatttctctttc |
118 |
Q |
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| T |
13185074 |
atgagttttcttaaataatacatacaaataccccttctaacttaaattaaacactaacctccttttagtttgttattaaattgacaaacatttatctttc |
13185173 |
T |
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| Q |
119 |
acctcaacattgttaaatctccactctcacactttcactaacactgaactcttgttaattgtctcctctatttgcaaacaaattagtggtataaa |
213 |
Q |
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| T |
13185174 |
acctcaacattgttaaatctccactctcacactttcactaacactgaactcttgttaattgtctcctctatttgcaaacatattagtggtataaa |
13185268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 13185272 - 13185315
Alignment:
| Q |
203 |
agtggtataaatttactgaataatgaatggcaacttccttaaaa |
246 |
Q |
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| T |
13185272 |
agtggtataaatttactgaataatgaatggcaacttcctaaaaa |
13185315 |
T |
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