View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19786_high_8 (Length: 709)
Name: NF19786_high_8
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_high_8 |
 | |
|
| [»] scaffold0085 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0085 (Bit Score: 661; Significance: 0; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 19 - 700
Target Start/End: Complemental strand, 45835 - 45154
Alignment:
| Q |
19 |
caacactgacaggtataattacattttattatgctannnnnnnaaattattatcggtctcgatgtgtcactatgtgtcactgttgtgtttggtgtctctg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45835 |
caacactgacaggtataattacattttattatgctatttttttaaattattatcggtctcgatgtgtcactatgtgtcactgttgtgtttggtgtctctg |
45736 |
T |
|
| Q |
119 |
tgtcagtgcttcatagatattatttgaatgaaacggaatggaacagcgttaaaccaaccatttgatcggttaaattgattaattagtacttttctttttg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45735 |
tgtcagtgcttcatagatattatttgaatgaaacggaatggaacagcgttaaaccaaccatttgatcggttaaattgattaattagtacttttctttttg |
45636 |
T |
|
| Q |
219 |
tgttaatatattaggttttattatttgcttactttttaataccgtggcatttgaatttttaagtatttgatgcgcttttcattttaaaagcagattaaaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45635 |
tgttaatatattaggttttattatttgcttactttttaataccgtggcatttgaatttttaagtatttgatgcgcttttcattttaaaagcagattaaaa |
45536 |
T |
|
| Q |
319 |
ttgactttaagaaaaatgtaattgaggaaatagtatttgcaactttttggatactaagaagcaaacctagtttttgtttaagcatgacaggggttttata |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45535 |
ttgactttaagaaaaatgtaattgaggaaatagtatttgcaactttttggatactaagaagcaaacctagtttttgtttaagcatgacaggggttttata |
45436 |
T |
|
| Q |
419 |
gaaaaaggctgtttactgaaatttggattgttatatcaaggtttttgatgtctttatgatcgcatagaagtatatttaacaattattctctgtaatatcg |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45435 |
gaaaaaggctgtttactgaaatttggattgttatatcaaggtttttgatgtctttatgatcgcatagaagtatatttaacaattattctctgtaatatcg |
45336 |
T |
|
| Q |
519 |
tggattatgtcgtgatcgcaatttaaaactttgcgcacggagaattgcttgaaaatttggtttttggatgatgcagaccaattcaaattgcacaaattct |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45335 |
tggattatgtcgtgatcgcaatttaaaactttgcgcacggagaattgcttgaaaatttggtttttggatgatgcagaccaattcaaattgcacaaattct |
45236 |
T |
|
| Q |
619 |
tcattctcagggacggaatcatgtcggcacttgtgcaggcccgtgcccccactttgtttctgattttcttggtacctttgct |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45235 |
tcattctcagggacggaatcatgtcggcacttgtgcaggcccgtgcccccactttgtttctgattttcttggtacctttgct |
45154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University