View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19786_high_93 (Length: 239)
Name: NF19786_high_93
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_high_93 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 43307957 - 43308178
Alignment:
| Q |
1 |
ttgtctattttctcttggaactagtagggggattggaggatgtaaccgtaatgtttctttaaccactgcttgtaagtatttcatgttacccaaatcatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43307957 |
ttgtctattttctcttggaactagtagggggattggaggatgtaaccgtaatgtttctttaaccactgcttgtaagtatttcatgttacccaaatcatct |
43308056 |
T |
|
| Q |
101 |
tcagttatgtgtgttctattgccagctacactccttacttcttcttgcaatttcttcatgatatttggatgtcttaagagttctgtcattgaccactcta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43308057 |
tcagttatgtgtgttctattgccagctacactccttacttcttcttgcaatttcttcatgatatttggatgtcttaagagttctgtcattgaccactcta |
43308156 |
T |
|
| Q |
201 |
gcaaggtggatatagtgtcagt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
43308157 |
gcaaggtggatatagtgtcagt |
43308178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 43267368 - 43267578
Alignment:
| Q |
9 |
tttctcttggaactagtagggggattggaggatgtaaccgtaatgtttctttaaccactgcttgtaagtatttcatgttacccaaatcatcttcagttat |
108 |
Q |
| |
|
|||||||||| ||||||| || |||| |||||||| |||| ||||||||||| ||||| | |||||||||||||| || ||||| ||||||||||| |
|
|
| T |
43267368 |
tttctcttggtactagtaatggaattgagggatgtaaacgtagggtttctttaactactgcatttaagtatttcatgtgacttaaatcttcttcagttat |
43267467 |
T |
|
| Q |
109 |
gtgtgttctattgccagctacactccttacttcttcttgcaatttcttcatgatatttggatgtcttaagagttctgtcattgaccactctagcaaggtg |
208 |
Q |
| |
|
|||||||||| ||| || ||| ||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||| ||| |
|
|
| T |
43267468 |
gtgtgttctaccattagccactctctttacttcttcttgcaattttttcatgatatttggatgccgtaagagttctgtcattgaccactctagcaaagtg |
43267567 |
T |
|
| Q |
209 |
gatatagtgtc |
219 |
Q |
| |
|
||||| ||||| |
|
|
| T |
43267568 |
gatatggtgtc |
43267578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 43287169 - 43287379
Alignment:
| Q |
9 |
tttctcttggaactagtagggggattggaggatgtaaccgtaatgtttctttaaccactgcttgtaagtatttcatgttacccaaatcatcttcagttat |
108 |
Q |
| |
|
|||||||||| ||||||| || |||| |||||||| |||| ||||||||||| ||||| | |||||||||||||| || ||||| ||||||||||| |
|
|
| T |
43287169 |
tttctcttggtactagtaatggaattgagggatgtaaacgtagggtttctttaactactgcatttaagtatttcatgtgacttaaatcttcttcagttat |
43287268 |
T |
|
| Q |
109 |
gtgtgttctattgccagctacactccttacttcttcttgcaatttcttcatgatatttggatgtcttaagagttctgtcattgaccactctagcaaggtg |
208 |
Q |
| |
|
|||||||||| ||| || ||| ||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||| ||| |
|
|
| T |
43287269 |
gtgtgttctaccattagccactctctttacttcttcttgcaattttttcatgatatttggatgccgtaagagttctgtcattgaccactctagcaaagtg |
43287368 |
T |
|
| Q |
209 |
gatatagtgtc |
219 |
Q |
| |
|
||||| ||||| |
|
|
| T |
43287369 |
gatatggtgtc |
43287379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 43274636 - 43274843
Alignment:
| Q |
12 |
ctcttggaactagtagggggattggaggatgtaaccgtaatgtttctttaaccactgcttgtaagtatttcatgttacccaaatcatcttcagttatgtg |
111 |
Q |
| |
|
||||||| ||||||| || | |||||||||||| |||| ||||||||||||||||| | |||||| ||||||| || |||||| |||||||||||||| |
|
|
| T |
43274636 |
ctcttgggactagtaatggaaatggaggatgtaaacgtagggtttctttaaccactgcctttaagtagttcatgtgactcaaatcttcttcagttatgtg |
43274735 |
T |
|
| Q |
112 |
tgttctattgccagctacactccttacttcttcttgcaatttcttcatgatatttggatgtcttaagagttctgtcattgaccactctagcaaggtggat |
211 |
Q |
| |
|
| ||||| ||| || |||| |||||||||||||||||||||||||||||||||| |||| |||||| |||||| |||||||||||| ||||| |
|
|
| T |
43274736 |
ttttctaccattagccaccaaccttgcttcttcttgcaatttcttcatgatatttggatgccttatgagttcagtcatttcccactctagcaaactggat |
43274835 |
T |
|
| Q |
212 |
atagtgtc |
219 |
Q |
| |
|
|| ||||| |
|
|
| T |
43274836 |
atggtgtc |
43274843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University