View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_low_108 (Length: 207)
Name: NF19786_low_108
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_108 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 52834699 - 52834880
Alignment:
| Q |
18 |
ctcattgtttataataacacactttttctctgaattttctacctannnnnnn-catcatttgttaatatgttgattttgtctcagccgttggattgtggt |
116 |
Q |
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| T |
52834699 |
ctcattgtttataataacacactttttctctcaattttctaccttttttttttcattatttgttaatatgttgattttgtctcagccgttggattgtggt |
52834798 |
T |
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| Q |
117 |
cctggccgtaaacttcctgaacttaaacccctggaaaatacttcccctgttttatacattggtcgcattccacacaggttct |
198 |
Q |
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| T |
52834799 |
cctggccgtaaacttcctgaacttaaacccctggaaaatacttcccctgttttatacattggtcgcattccacacgggttct |
52834880 |
T |
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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 190
Target Start/End: Complemental strand, 48969825 - 48969735
Alignment:
| Q |
100 |
agccgttggattgtggtcctggccgtaaacttcctgaacttaaacccctggaaaatacttcccctgttttatacattggtcgcattccaca |
190 |
Q |
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| T |
48969825 |
agccgttggaaggtggtcctggtcgcaaacttcctgaacttaaacaattggagaattcttcccctgttttgtatattggtcggattccaca |
48969735 |
T |
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