View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19786_low_12 (Length: 657)

Name: NF19786_low_12
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19786_low_12
NF19786_low_12
[»] chr4 (1 HSPs)
chr4 (10-639)||(43986752-43987382)


Alignment Details
Target: chr4 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 10 - 639
Target Start/End: Complemental strand, 43987382 - 43986752
Alignment:
Q  10 catcatcatttcaaatcttttcctcactcctccttccttcc----cccaattacatttacaaatccacaaaaacagataaataaatttagttacagcaac 105  Q
    |||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43987382 catcatcatttcaaatcttttcctcactcctccttccttccttcccccaattacatttacaaatccacaaaaacagataaataaatttagttacagcaac 43987283  T
Q  106 cgtaatcctccacgtgtccataacgaatcttccccagttcctactcatttcctctaaatcctagtcaaccaaatatcttaacacgtgtccactatattcc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43987282 cgtaatcctccacgtgtccataacgaatcttccccagttcctactcatttcctctaaatcctagtcaaccaaatatcttaacacgtgtccactatattcc 43987183  T
Q  206 acagtcagcaacaacacacgctcatgtccttctcttcctcctataatataaccttaccttacactatccaaattcaactcaactcaaaacaaaacaacta 305  Q
    |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43987182 acagtcagcaacaacacacgctcatgtccttctcttcct---ataatataaccttaccttacactatccaagttcaactcaactcaaaacaaaacaacta 43987086  T
Q  306 tagtatagtgtattattatgaatttgtttgtttcaattaaataatgactagttctcatcttactaatcaaagggatcgccgtatcctatcattcccggcg 405  Q
    |||| || | |  ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43987085 tagtgtattattatattatgaatttgtttgtttcaattcaataatgactagtactcatcttactaatcaaagggatcgccgtatcctatcattcccggcg 43986986  T
Q  406 gttcacccttgcgaaaacatatctcccacaacactcatcacttctctaatcaatctttcacaaactatatccaatttccaacctcaaatattcccaacac 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43986985 gttcacccttgcgaaaacatatctcccacaacactcatcacttctctaatcaatctttcacaaactatatccaatttccaacctcaaatattcccaacac 43986886  T
Q  506 aaaaacgtaacgcaagagaaactatacgtcaaattactataatttcaattttcctcaacgaaattaaagaccatggttccattattcctaactcaattat 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43986885 aaaaacgtaacgcaagagaaactatacgtcaaattactataatttcaattttcctcaacgaaattaaagaccatggttccattattcctaactcaattat 43986786  T
Q  606 cctatgcttttctgagcttcacttcactttacaa 639  Q
    |||||||||||| |||||||||||||||||||||    
T  43986785 cctatgcttttcggagcttcacttcactttacaa 43986752  T

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