View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19786_low_14 (Length: 629)

Name: NF19786_low_14
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19786_low_14
NF19786_low_14
[»] chr7 (2 HSPs)
chr7 (10-629)||(34672062-34672687)
chr7 (10-145)||(34791031-34791166)


Alignment Details
Target: chr7 (Bit Score: 489; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 10 - 629
Target Start/End: Complemental strand, 34672687 - 34672062
Alignment:
Q  10 gagaagaagcaatcatagaagactcagaaagccaaattttggcggcgcctttggaaagagagtcggtggattcaatatcgctgatttcgacgacgaaagc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34672687 gagaagaagcaatcatagaagactcagaaagccaaattttggcggtgcctttggaaagagagtcggtggattcaatatcgctgatttcgacgacgaaagc 34672588  T
Q  110 agattgtgaaatgaaggaagggaagattcgagaagcttcttggcagagagagacgaaatgttgtggttccgcggccgtggtgcatggtggagtggcggcg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34672587 agattgtgaaatgaaggaagggaagattcgagaagcttcttggcagagagagacgaaatgttgtggttccgcggccgtggtgcatggtggagtggcggcg 34672488  T
Q  210 gcatcgttgggaattgacgacgatgatgataaccttaattgcttcttgttgctgctactatgatttgtactcaaagaaggcatggttgagagtgag---n 306  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |        
T  34672487 gcatcgttgggaattgacgacgatgatgataaacttaattgcttcttgttgctgctactatgatttgtactcaaagaaggcatggttgagagtgtgagtt 34672388  T
Q  307 nnnnnnnncacagaattttggagagagag----gtatatgttagtgaggtgagtctttactcccaagttagggttttataaaacccaacaactaactgga 402  Q
            || ||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34672387 ttttttcacagagaattttggagagagaggtatgtatatgttagtgaggtgagtctttactcccaagttagggttttataaaacccaacaactaactgga 34672288  T
Q  403 ttcaactacatttggctcgcaaatttatatgtgactttttcttatagtagggtgtccaaatgacgggctaggacatgttgtatgtgacttgaagccaact 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  34672287 ttcaactacatttggctcgcaaatttatatgtgactttttcttatagtagggtgttcaaatgacgggctaggacatgttgtatgtgacttgaagccaact 34672188  T
Q  503 ctcttaa---tattaatttgagccaacttcgactttttctttagaagggattgatgtggttgagaagcggatggcaaataaaatgaaatttttaacggaa 599  Q
    |||||||   ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||| ||||||||| |||| |||  ||||||    
T  34672187 ctcttaacattattaatttgagccaacttcgactttttctttagaagg----gatgtggttgagaagcggatgacaaataaaaagaaactttcgacggaa 34672092  T
Q  600 ttgacattaatcaaacaatgtaactaatgt 629  Q
    ||| | |||| |||||||||||||||||||    
T  34672091 ttgtctttaaccaaacaatgtaactaatgt 34672062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 34791031 - 34791166
Alignment:
Q  10 gagaagaagcaatcatagaagactcagaaagccaaattttggcggcgcctttggaaagagagtcggtggattcaatatcgctgatttcgacgacgaaagc 109  Q
    ||||||| |||| ||| ||||| ||||| |||||||||||||||||||||||||||||||| |||| ||||||||  ||| | |||||  | |||| |||    
T  34791031 gagaagatgcaaccatggaagattcagagagccaaattttggcggcgcctttggaaagagaatcggcggattcaacgtcggtaatttcagcaacgagagc 34791130  T
Q  110 agattgtgaaatgaaggaagggaagattcgagaagc 145  Q
     || ||||||||||| ||||||||||||||||||||    
T  34791131 tgaatgtgaaatgaaagaagggaagattcgagaagc 34791166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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