View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_low_15 (Length: 623)
Name: NF19786_low_15
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Original strand, 28954224 - 28954816
Alignment:
| Q |
1 |
acctgcaattgtggtcctgtttggtgttagtagttatgacatgcatttagttatgatctgaagtt------tcagtttcagcagagaaagttcccatctt |
94 |
Q |
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| T |
28954224 |
acctgcaattgtggtcctgtttggtgttagtagttatgacatgcatttagttatgatctgaagtttcagtttcagtttcagcagagaaagttcccatctt |
28954323 |
T |
|
| Q |
95 |
ttgtatatcagaatcagatcagaaccaaaagagttagtatttttgaaaaagggaagtgtgatgtgtaagttcaaaaataaacaatgtgattaatttgtgt |
194 |
Q |
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| T |
28954324 |
ttgtatatcagaatcagatcagaaccaaaagagttagtatttttgaaaaagggaagtgtgatgtgtaagttcaaaaataaacaatgtgattaatttgtgt |
28954423 |
T |
|
| Q |
195 |
atttttgaaaaacaaggatgagaatggaattttggtacaaagtgagtttgaagtcattgtcttatagctataaataattaaatatccacctccaaagtac |
294 |
Q |
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| T |
28954424 |
atttttgaaaaacaaggatgagaatggaactttggtacaaagtgagtttgaagttattgtcttatagctataaataattaaatatccacctccaaagtac |
28954523 |
T |
|
| Q |
295 |
gattcctttgtattttggcacttattgactgtaattttttaaatatctttcagtgttttttggcgcaatgtaaaaagaatttcacaccacatatactann |
394 |
Q |
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| T |
28954524 |
gattcctttgtattttggcacttattgactgtaattttttaaatatctttcagtgttttttggcgcaatgtaaaaagaatttcacaccacatatactatt |
28954623 |
T |
|
| Q |
395 |
nnnnnatgcaaataggaattcatttatatgtatataaatttgtattgtactattgtttattaaggtcaacagagaata------ttttaaaattttcaac |
488 |
Q |
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| T |
28954624 |
tttttatgcaaataggaattcatttatatgtatataaatttgtattg---tattgtttattaaggtcaacagagaatatgcaattttttaaattttcaac |
28954720 |
T |
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| Q |
489 |
tacatgtcctttttctttgatagtgactgttcaccggatcnnnnnnnttatagcaaaacatgcttaaatcaactgtttgcgtaattaaaaagattaa |
585 |
Q |
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| T |
28954721 |
tacatgtcctttttctttgatagtgactgttcaccggatcaaaaaaattatagcaaaacatgcttaaatcaactg-ttgcgtaattaaaaagattaa |
28954816 |
T |
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