View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19786_low_18 (Length: 596)
Name: NF19786_low_18
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 502; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 15 - 581
Target Start/End: Original strand, 1629944 - 1630514
Alignment:
| Q |
15 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagagtaattatttaaaataaaaaattaaagtaattgtatg----taagaaagcctcaagt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
1629944 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagagtaattatttaaaataaaaaatgaaagtaattgtatgcatgtaagaaagcctcaagt |
1630043 |
T |
|
| Q |
111 |
ataatttaaatattataaacctatcttattataaaaatttagaacttcaaatgataaaataaaaagagattaaaggagatggaatataactcacctgctg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1630044 |
ataatttaaatattataaacctatcttattataaaaatttagaacttcaaatgataaaataaaaagagattaaaggagatggaatataactcacctgctg |
1630143 |
T |
|
| Q |
211 |
ttgcagagctataagtggtataaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcaccgaccaacataatgttatcattatg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||||| || |||||||| |
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|
| T |
1630144 |
ttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataatattgtcattatg |
1630243 |
T |
|
| Q |
311 |
aacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagcttgc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630244 |
aacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagcttgc |
1630343 |
T |
|
| Q |
411 |
acagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagcttcctttcatgcacagaaaaccaat |
510 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1630344 |
acagtcttgtactgtccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagcttcctttcatgcacagaaaaccaat |
1630443 |
T |
|
| Q |
511 |
ttggaaatgacccttcttctgtttctgcaagtgacgaatccagatattttgattaatatgactatatatat |
581 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||| |
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|
| T |
1630444 |
ttgaaaatgacccttcttctgtttctgcaagtgacgaatccaaaatttttgattagtatgactatatatat |
1630514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 184 - 580
Target Start/End: Original strand, 1624142 - 1624538
Alignment:
| Q |
184 |
aggagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttatgatggtattttgcattccatc |
283 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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|
| T |
1624142 |
aggaaatgaaatataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatc |
1624241 |
T |
|
| Q |
284 |
accgaccaacataatgttatcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctc |
383 |
Q |
| |
|
||| |||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1624242 |
accaaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctc |
1624341 |
T |
|
| Q |
384 |
ttagcagcagcatttaaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaa |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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|
| T |
1624342 |
ttagcagcagcatttaaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggaccctttgactgcaaaa |
1624441 |
T |
|
| Q |
484 |
gcttcctttcatgcacagaaaaccaatttggaaatgacccttcttctgtttctgcaagtgacgaatccagatattttgattaatatgactatatata |
580 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||| |
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|
| T |
1624442 |
gcttcctttcatgcacagaaaaccaatttggaaatgacccttcttctgtttctgcaagtgacggatccagaaattttgattagtatgactatatata |
1624538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 184 - 581
Target Start/End: Original strand, 1607121 - 1607518
Alignment:
| Q |
184 |
aggagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttatgatggtattttgcattccatc |
283 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
1607121 |
aggaaatgaaatataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatc |
1607220 |
T |
|
| Q |
284 |
accgaccaacataatgttatcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctc |
383 |
Q |
| |
|
||| |||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1607221 |
accaaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctc |
1607320 |
T |
|
| Q |
384 |
ttagcagcagcatttaaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaa |
483 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
1607321 |
ttagcagcagcatttaaagcagcctgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgtactttactggaccctttgactgcaaaa |
1607420 |
T |
|
| Q |
484 |
gcttcctttcatgcacagaaaaccaatttggaaatgacccttcttctgtttctgcaagtgacgaatccagatattttgattaatatgactatatatat |
581 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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|
| T |
1607421 |
gcttcctttcatgcacagaaaaccaatttggaaatgacccttcttctgtttctgcaagtgacgaatccagaaattttgattagtatgactatatatat |
1607518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 186 - 581
Target Start/End: Complemental strand, 10820160 - 10819760
Alignment:
| Q |
186 |
gagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcac |
285 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10820160 |
gagatggaatataactcaccggctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcac |
10820061 |
T |
|
| Q |
286 |
cgaccaacataatgttatcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctctt |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||| ||||||||||| |
|
|
| T |
10820060 |
cgaccaacataatgttatcattatgaacagcaacctcaatgttctctttataaacacctttcttcacatgtatcacataccttgtcttgtattttctctt |
10819961 |
T |
|
| Q |
386 |
agcagcagcatttaaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagc |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||| |
|
|
| T |
10819960 |
agcagcagcatttaaagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgaacttcattggagacttagactgcaaaagc |
10819861 |
T |
|
| Q |
486 |
ttcctttcatgcacagaaaaccaatttggaaatgacccttc------ttctgtttctgcaagtgacgaatccagatattttgattaatatgactatatat |
579 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||| ||||||| |||| ||||| ||||||||||||| |
|
|
| T |
10819860 |
ttcctttcatgcacagaaaaccaatttggaagtgacccttcttctatttctgtttctgcaa-tgacggatccagaaatttagattagtatgactatatat |
10819762 |
T |
|
| Q |
580 |
at |
581 |
Q |
| |
|
|| |
|
|
| T |
10819761 |
at |
10819760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 10820754 - 10820598
Alignment:
| Q |
15 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagagtaattatttaaaataaaaaattaaagtaattgtatgtaagaaagcctcaagtataa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| ||||||||||| ||| ||||| |
|
|
| T |
10820754 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagagtaattatttaaaa----atatgaaagtaattgtaggtaagaaagccacaattataa |
10820659 |
T |
|
| Q |
115 |
tttaaatattataaacctatcttattataaaaatttagaacttcaaatgataaaataaaaa |
175 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||| |
|
|
| T |
10820658 |
tttaaatattataaacctatcttagtataaaattttagaacttcaaaatataaaataaaaa |
10820598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 1606646 - 1606689
Alignment:
| Q |
15 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagag |
58 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606646 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagag |
1606689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 195 - 544
Target Start/End: Original strand, 18785179 - 18785528
Alignment:
| Q |
195 |
tataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcaccgaccaaca |
294 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||| |
|
|
| T |
18785179 |
tataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccaaca |
18785278 |
T |
|
| Q |
295 |
taatgttatcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagc |
394 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18785279 |
taatgttatcattgtgaaccgcaacctcaatgttctctttataaacacctttcttcacatgtatcacaaaccttgtcttatattttctcttagcagcagc |
18785378 |
T |
|
| Q |
395 |
atttaaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagcttcctttca |
494 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18785379 |
atttagagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaatattgtactttactggagacttagactgcaaaagcttcctttca |
18785478 |
T |
|
| Q |
495 |
tgcacagaaaaccaatttggaaatgacccttcttctgtttctgcaagtga |
544 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18785479 |
tgcatagaaaaccaatttggaaatgacccttcttctgtttctgcaagtga |
18785528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 203 - 409
Target Start/End: Original strand, 12803384 - 12803590
Alignment:
| Q |
203 |
acctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcaccgaccaacataatgtta |
302 |
Q |
| |
|
|||||| || ||||||||||| || ||| ||||| |||||||| ||||| ||||||||| | |||||| |||||||||| ||||||||||| ||| |
|
|
| T |
12803384 |
acctgcagtggcagagctataggtagtaaaaccagcttgaacatttctattacttgttatcactgtatttctacttccatcacctaccaacataatatta |
12803483 |
T |
|
| Q |
303 |
tcatt-atgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaa |
401 |
Q |
| |
|
||||| || | ||||| |||| ||||||||||||||||||||||| ||| |||| ||||| ||||| ||| | ||||| | |||||||||||| | |
|
|
| T |
12803484 |
tcattcatcttcc-caaccacaatattctctctataaacacctttcttcacacgtataacaaatcttgttttaaaccttctcctcccagcagcatttata |
12803582 |
T |
|
| Q |
402 |
gcagcttg |
409 |
Q |
| |
|
||| |||| |
|
|
| T |
12803583 |
gcatcttg |
12803590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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