View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_low_23 (Length: 566)
Name: NF19786_low_23
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 55 - 279
Target Start/End: Original strand, 37269749 - 37269974
Alignment:
| Q |
55 |
agaatataatgggggaggagattgtcccc-cgttatattttcgatcaagaccctccattaaaaaggtgacataagtgcttttattattaaaaagggagag |
153 |
Q |
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| T |
37269749 |
agaatataatgggggaggagattgtccccccgttatattttcgatcaagaccctccattaaaaaggtgacataagtgtttttattattaaaaaaggagag |
37269848 |
T |
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| Q |
154 |
tataattaagggttgagattcaacactagaaaacttgagagttttcaacgggagagaatctgctccccttccgtatattttatttcacactatttcttca |
253 |
Q |
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| T |
37269849 |
tataattaagggttgagattcaacactagaaaacttgagagttttcaacgggagagaatctgctccccttccgtatattttatttcacactatttcttca |
37269948 |
T |
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| Q |
254 |
tcgatgtaaacatctataaggacgat |
279 |
Q |
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| T |
37269949 |
tcgatgtaaacatctataaggacgat |
37269974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 306 - 549
Target Start/End: Original strand, 37270001 - 37270248
Alignment:
| Q |
306 |
ttgatcttgatcctcaactcttattcttctcactgccaatcatacattatacatttacacaaattagaggcgggtttttagttttacaagtga---ttgt |
402 |
Q |
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| T |
37270001 |
ttgatcttgatcctcaactcttattcttctcactgccaatcatacattatacatttacacaaattagaggcgggtttttagttttacaagtgaattttgt |
37270100 |
T |
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| Q |
403 |
aaaagaagatcaacgattaaactt-nnnnnnnntatatgatttagaactatatacttcaactgtcaattgattagtatgatctatcatattcgaggagca |
501 |
Q |
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| T |
37270101 |
aaaagaagatctacgattaaacttaaaaaaaaatatatgatttagaactatatacttcaactgtcaattgattagtatgattgatcatattcgaggagta |
37270200 |
T |
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| Q |
502 |
acagacattttaatagacaccaaaaatgtgttcgtgtacacctctcct |
549 |
Q |
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| T |
37270201 |
acagacattttaatagacaccaaaaatgtgttcgtgtacacctctcct |
37270248 |
T |
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