View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19786_low_24 (Length: 561)

Name: NF19786_low_24
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19786_low_24
NF19786_low_24
[»] chr1 (20 HSPs)
chr1 (1-553)||(51850561-51851113)
chr1 (197-294)||(52920979-52921076)
chr1 (197-294)||(32079305-32079402)
chr1 (197-294)||(49350471-49350568)
chr1 (201-294)||(4001850-4001943)
chr1 (428-553)||(51821181-51821306)
chr1 (430-543)||(51861142-51861255)
chr1 (199-294)||(49527435-49527530)
chr1 (204-290)||(9599915-9600001)
chr1 (199-294)||(1290190-1290285)
chr1 (220-294)||(8670805-8670879)
chr1 (213-294)||(6985613-6985692)
chr1 (196-295)||(15424508-15424605)
chr1 (227-294)||(52463087-52463154)
chr1 (94-150)||(49808828-49808884)
chr1 (207-287)||(52815018-52815098)
chr1 (223-294)||(6039612-6039683)
chr1 (197-288)||(16538758-16538848)
chr1 (217-295)||(47876937-47877016)
chr1 (197-237)||(51444589-51444629)
[»] chr2 (8 HSPs)
chr2 (196-294)||(1648007-1648105)
chr2 (197-293)||(37520591-37520687)
chr2 (204-293)||(11992914-11993003)
chr2 (197-294)||(16290743-16290840)
chr2 (191-294)||(8561068-8561171)
chr2 (197-290)||(45329643-45329736)
chr2 (233-289)||(23766906-23766962)
chr2 (233-289)||(23796099-23796155)
[»] chr5 (8 HSPs)
chr5 (197-294)||(2078538-2078635)
chr5 (197-281)||(10293688-10293772)
chr5 (213-292)||(39668781-39668860)
chr5 (215-294)||(11069363-11069442)
chr5 (194-294)||(32489098-32489198)
chr5 (214-292)||(3292648-3292725)
chr5 (227-292)||(22703827-22703892)
chr5 (200-253)||(25160-25213)
[»] chr3 (6 HSPs)
chr3 (197-294)||(51450764-51450861)
chr3 (197-291)||(52136315-52136409)
chr3 (197-294)||(31566259-31566356)
chr3 (197-294)||(7023147-7023244)
chr3 (205-287)||(9256267-9256349)
chr3 (209-292)||(27215623-27215706)
[»] chr6 (4 HSPs)
chr6 (197-292)||(20430569-20430664)
chr6 (207-294)||(6079585-6079672)
chr6 (205-295)||(2544927-2545017)
chr6 (224-285)||(26489368-26489429)
[»] chr8 (8 HSPs)
chr8 (197-291)||(16008440-16008534)
chr8 (197-286)||(4061809-4061898)
chr8 (197-291)||(35323871-35323965)
chr8 (197-294)||(15218281-15218378)
chr8 (195-288)||(3801830-3801924)
chr8 (213-271)||(29520507-29520565)
chr8 (213-294)||(35249793-35249878)
chr8 (213-295)||(30453848-30453931)
[»] scaffold0710 (1 HSPs)
scaffold0710 (430-543)||(5101-5214)
[»] scaffold0279 (1 HSPs)
scaffold0279 (197-294)||(18383-18480)
[»] scaffold0024 (1 HSPs)
scaffold0024 (201-295)||(48256-48350)
[»] scaffold0245 (1 HSPs)
scaffold0245 (199-294)||(16595-16690)
[»] scaffold0001 (1 HSPs)
scaffold0001 (229-294)||(440116-440181)
[»] chr4 (8 HSPs)
chr4 (197-294)||(883528-883625)
chr4 (213-290)||(54529560-54529636)
chr4 (197-294)||(16000230-16000323)
chr4 (197-294)||(27453164-27453259)
chr4 (212-253)||(42309152-42309193)
chr4 (229-293)||(38475065-38475129)
chr4 (235-295)||(55770383-55770443)
chr4 (235-295)||(55834639-55834699)
[»] scaffold0050 (1 HSPs)
scaffold0050 (213-269)||(70401-70457)
[»] chr7 (4 HSPs)
chr7 (228-294)||(46833165-46833228)
chr7 (225-296)||(30089118-30089189)
chr7 (238-294)||(36232115-36232169)
chr7 (213-295)||(37595492-37595575)


Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Original strand, 51850561 - 51851113
Alignment:
Q  1 ttattttaggtaagcatattattgactcctggtttaataacagtgcannnnnnnnnna---cacaataatgaaaatcttgnnnnnnnnn-ggtaaagata 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||| ||||          ||||||||||    
T  51850561 ttattttaggtaagcatattattgactcctggtttaataacagtgcatttttttttttttgcacaataatgaaaaacttgttttttttttggtaaagata 51850660  T
Q  97 aaacatttgttttttgaaattgtgagagaagctcaattggtacgttaaacatgaaactaccaaagatattaaatcccctattattcattagtaggaatag 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  51850661 aaacatttgttttttgaaattgtgagagaagctcaattggtacgttaaacatgaaacgaccaaagatattaaatcccctattattcattagtaggaatag 51850760  T
Q  197 aatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatggatt 296  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  51850761 aatcctgccaaggccagtcccaagcctgggtaaaaggagagggttgtgttaggcctcgacatccaacataaaacttcgtcgaatctctatgacatggatt 51850860  T
Q  297 cattagtaagagtagcgttaactaattaatgcttgtagttttcgttatcttataatagcaattttattaaaatattatgtcatgtgacttgggcttctca 396  Q
    ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51850861 cattagtaagagtagcgttaac----taatgcttgtagttttcgttatcttataatagcaattttattaaaatattatgtcatgtgacttgggcttctca 51850956  T
Q  397 aatgtttttctgagccgttgcttcactattggcaggagctgcagctacctatgtcagattcatcccttatataaagaaaaactacgattatggtgttatg 496  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51850957 aatgtttttctgagccattgcttcactattggcaggagctgcagctacctatgtcagattcatcccttatataaagaaaaactacgattatggtgttatg 51851056  T
Q  497 atatttctgttgacctttaatttgataattgtatcaagttaccgcgttgatgatgtc 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  51851057 atatttctgttgacctttaatttgataattgtatcaagttaccgcgttgataatgtc 51851113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 197 - 294
Target Start/End: Original strand, 52920979 - 52921076
Alignment:
Q  197 aatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||| |||||||||||||||||||||    
T  52920979 aatcctgccaaggccggtcccaagcccgggtaaaaggagagggttgtgttaggccttgacagccaacataaaactttgtcgaatctctatgacatgga 52921076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 197 - 294
Target Start/End: Original strand, 32079305 - 32079402
Alignment:
Q  197 aatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| |||||||||||||||||||||    
T  32079305 aatcctgccaaggccggtctcaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgacatgga 32079402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 197 - 294
Target Start/End: Complemental strand, 49350568 - 49350471
Alignment:
Q  197 aatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||| |||||||||||||||||||||    
T  49350568 aatcctgccaaggccggtcccaagcccaggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgacatgga 49350471  T

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Target: chr1; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 201 - 294
Target Start/End: Original strand, 4001850 - 4001943
Alignment:
Q  201 ctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| |||||||||||||||||||||    
T  4001850 ctgccaaggccggccccaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgacatgga 4001943  T

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Target: chr1; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 428 - 553
Target Start/End: Original strand, 51821181 - 51821306
Alignment:
Q  428 gcaggagctgcagctacctatgtcagattcatcccttatataaagaaaaactacgattatggtgttatgatatttctgttgacctttaatttgataattg 527  Q
    ||||||||||||||||| | |||||||||||| || ||||| ||||| || || || |||||||||||| ||||||| ||||||||||||||||||||||    
T  51821181 gcaggagctgcagctacatttgtcagattcattccctatatcaagaagaattatgactatggtgttatggtatttctcttgacctttaatttgataattg 51821280  T
Q  528 tatcaagttaccgcgttgatgatgtc 553  Q
    |||| |||||||| |||||| |||||    
T  51821281 tatcgagttaccgtgttgataatgtc 51821306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 430 - 543
Target Start/End: Original strand, 51861142 - 51861255
Alignment:
Q  430 aggagctgcagctacctatgtcagattcatcccttatataaagaaaaactacgattatggtgttatgatatttctgttgacctttaatttgataattgta 529  Q
    ||||||| | ||||| ||||| || ||||| |||||||||||||| || || || |||||||||||||||||||| ||||||||||||||||| ||||||    
T  51861142 aggagcttctgctacttatgtaaggttcattccttatataaagaagaattatgactatggtgttatgatatttctcttgacctttaatttgatgattgta 51861241  T
Q  530 tcaagttaccgcgt 543  Q
    ||||||||||||||    
T  51861242 tcaagttaccgcgt 51861255  T

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Target: chr1; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 199 - 294
Target Start/End: Complemental strand, 49527530 - 49527435
Alignment:
Q  199 tcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    ||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||| | ||| |||||||| || ||||||||||||||||||    
T  49527530 tcctgccaaggccggtcccaagctcgggtaaaaggagaggattgtgttaggcctcgacagccaacgtaaaactttgttgaatctctatgacatgga 49527435  T

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Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 204 - 290
Target Start/End: Original strand, 9599915 - 9600001
Alignment:
Q  204 ccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgaca 290  Q
    |||||||  ||||||||| ||||||||||||||||||||||||||||||||||| | ||| |||||||| |||| ||||||||||||    
T  9599915 ccaaggcgggtcccaagctcgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcggatctctatgaca 9600001  T

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Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 199 - 294
Target Start/End: Complemental strand, 1290285 - 1290190
Alignment:
Q  199 tcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    ||||||||||||| |||||||||||||||||||  |||||||||||| |||||| |||| | ||| ||||||||  | ||||||||||||||||||    
T  1290285 tcctgccaaggccggtcccaagcccgggtaaaaaaagagggttgtgtcaggccttgacagccaacgtaaaactttttagaatctctatgacatgga 1290190  T

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Target: chr1; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 220 - 294
Target Start/End: Complemental strand, 8670879 - 8670805
Alignment:
Q  220 gcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    |||||||||||||||||||||||||||||||||||||| | ||  |||||||| ||||||||||||| |||||||    
T  8670879 gcccgggtaaaaggagagggttgtgttaggcctcgacagccaatgtaaaactttgtcgaatctctataacatgga 8670805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 213 - 294
Target Start/End: Complemental strand, 6985692 - 6985613
Alignment:
Q  213 gtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    ||||||||||||| | ||||||||||||||||||||||  ||||| | ||| |||||||| |||||||||||||||||||||    
T  6985692 gtcccaagcccggatgaaaggagagggttgtgttaggc--cgacagccaacgtaaaactttgtcgaatctctatgacatgga 6985613  T

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Target: chr1; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 196 - 295
Target Start/End: Complemental strand, 15424605 - 15424508
Alignment:
Q  196 gaatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatggat 295  Q
    ||||||| |||||||| |||||||||| || |||||||||||| |||||||||||| ||||| | ||| |||||||| ||| ||||||||| ||||||||    
T  15424605 gaatcctaccaaggccggtcccaagcc-ggataaaaggagagg-ttgtgttaggccacgacaaccaacgtaaaactttgtcaaatctctataacatggat 15424508  T

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Target: chr1; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 52463154 - 52463087
Alignment:
Q  227 taaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    |||||||||||||||||||||| |||||||  | ||| |||||||| |||||||||||||||||||||    
T  52463154 taaaaggagagggttgtgttagacctcgactgccaacttaaaactttgtcgaatctctatgacatgga 52463087  T

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Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 49808884 - 49808828
Alignment:
Q  94 ataaaacatttgttttttgaaattgtgagagaagctcaattggtacgttaaacatga 150  Q
    |||| |||||||||| |||||||| |||||||||||||||||||| |||||||||||    
T  49808884 ataatacatttgtttgttgaaattatgagagaagctcaattggtatgttaaacatga 49808828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 207 - 287
Target Start/End: Original strand, 52815018 - 52815098
Alignment:
Q  207 aggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatg 287  Q
    ||||| ||||||| | |||||||||||||||||||||||||||||| |||| | ||| |||||||| || || ||||||||    
T  52815018 aggccggtcccaaactcgggtaaaaggagagggttgtgttaggccttgacaaccaacgtaaaactttgttgactctctatg 52815098  T

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Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 6039612 - 6039683
Alignment:
Q  223 cgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    |||||||||||||| |||||| ||||||||| ||| | ||| |||||||| || ||||||||||||||||||    
T  6039612 cgggtaaaaggagaaggttgtattaggcctcaacagccaacgtaaaactttgttgaatctctatgacatgga 6039683  T

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Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 288
Target Start/End: Complemental strand, 16538848 - 16538758
Alignment:
Q  197 aatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatga 288  Q
    ||||||||||||| | ||||||||| | |||||||||||| ||||||||||| |||||||| | |||| ||||||| || ||||||| ||||    
T  16538848 aatcctgccaaggtcggtcccaagctctggtaaaaggagatggttgtgttagacctcgacaaccaaca-aaaacttagttgaatctccatga 16538758  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 295
Target Start/End: Original strand, 47876937 - 47877016
Alignment:
Q  217 caagcccgggtaaaaggagagggttgtgttaggc-ctcgacatctaacataaaacttcgtcgaatctctatgacatggat 295  Q
    |||||| || |||||||||||| |||||||||||  |||||| | |||| | || || ||||||||||||||||||||||    
T  47876937 caagcctggataaaaggagaggattgtgttaggcagtcgacagccaacacagaaatttgtcgaatctctatgacatggat 47877016  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 51444629 - 51444589
Alignment:
Q  197 aatcctgccaaggccagtcccaagcccgggtaaaaggagag 237  Q
    ||||||||||| ||| ||||||||| |||||||||||||||    
T  51444629 aatcctgccaaagccggtcccaagcacgggtaaaaggagag 51444589  T

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Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 196 - 294
Target Start/End: Original strand, 1648007 - 1648105
Alignment:
Q  196 gaatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| |||||||||||||||||||||    
T  1648007 gaatcctgccaaggccggtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgacatgga 1648105  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 197 - 293
Target Start/End: Original strand, 37520591 - 37520687
Alignment:
Q  197 aatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgg 293  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| ||||||||||||||||||||    
T  37520591 aatcctgccaaggccggtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgacatgg 37520687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 204 - 293
Target Start/End: Original strand, 11992914 - 11993003
Alignment:
Q  204 ccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgg 293  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||    
T  11992914 ccaaggccggtcccaagcccgggtaaaagaagagggttgtgttaggcctcgacagccaacataaaactttgtcgaatctctatgacatgg 11993003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 197 - 294
Target Start/End: Original strand, 16290743 - 16290840
Alignment:
Q  197 aatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| | | ||| |||||||| |||||||||||||||||||||    
T  16290743 aatcctgccaaggccggtcccaagcccgggtaaaaggaaagggttgtgttaggcctcgatagccaacgtaaaactttgtcgaatctctatgacatgga 16290840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 191 - 294
Target Start/End: Complemental strand, 8561171 - 8561068
Alignment:
Q  191 gaatagaatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgaca 290  Q
    ||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||| || ||||| ||||||||    
T  8561171 gaataaaatcctgccaaggccggtcccaagcctgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgttgaatccctatgaca 8561072  T
Q  291 tgga 294  Q
    ||||    
T  8561071 tgga 8561068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 197 - 290
Target Start/End: Complemental strand, 45329736 - 45329643
Alignment:
Q  197 aatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgaca 290  Q
    |||| ||| |||||| | |||||||| | |||||||||||||||||||||||| ||||||| | ||| ||||||||  ||||||||||||||||    
T  45329736 aatcatgctaaggccggccccaagcctgagtaaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttatcgaatctctatgaca 45329643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 23766962 - 23766906
Alignment:
Q  233 gagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgac 289  Q
    ||||||||||||||||||||||||| | ||| |||||||| ||||||||||||||||    
T  23766962 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 23766906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 23796155 - 23796099
Alignment:
Q  233 gagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgac 289  Q
    ||||||||||||||||||||||||| | ||| |||||||| ||||||||||||||||    
T  23796155 gagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgac 23796099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 197 - 294
Target Start/End: Complemental strand, 2078635 - 2078538
Alignment:
Q  197 aatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| | ||  |||||||| |||||||||||||||||||||    
T  2078635 aatcctgccaaggccggtcccaagcccggataaaaggagagggttgtgttaggcctcgacagccaaagtaaaactttgtcgaatctctatgacatgga 2078538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 197 - 281
Target Start/End: Complemental strand, 10293772 - 10293688
Alignment:
Q  197 aatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatc 281  Q
    ||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||  ||| |||||||| ||||||||    
T  10293772 aatcctgccaaggccggtcccaaactcgggtaaaaggagagggttgtgttaggcctcgacatgcaacgtaaaactttgtcgaatc 10293688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 39668860 - 39668781
Alignment:
Q  213 gtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatg 292  Q
    ||||||||||||||||||||| |||||||||||||| |||||||| | ||| |||||||| |||||||||||||||||||    
T  39668860 gtcccaagcccgggtaaaaggtgagggttgtgttagtcctcgacagccaacgtaaaactttgtcgaatctctatgacatg 39668781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 215 - 294
Target Start/End: Complemental strand, 11069442 - 11069363
Alignment:
Q  215 cccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| | |||  ||||||| |||||||||||||||||||||    
T  11069442 cccaagcccgggtaaaaggagagcgttgtgttaggcctcaacaaccaacgcaaaactttgtcgaatctctatgacatgga 11069363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 194 - 294
Target Start/End: Original strand, 32489098 - 32489198
Alignment:
Q  194 tagaatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgg 293  Q
    ||||||| || ||||||| || |||||| || ||||||||||||||||||||||| ||||||||   ||| |||||||| |||||||| |||||||||||    
T  32489098 tagaatcttgtcaaggccggttccaagctcgagtaaaaggagagggttgtgttagacctcgacagtcaacgtaaaactttgtcgaatccctatgacatgg 32489197  T
Q  294 a 294  Q
    |    
T  32489198 a 32489198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 214 - 292
Target Start/End: Original strand, 3292648 - 3292725
Alignment:
Q  214 tcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatg 292  Q
    |||||||||||| | |||| |||||||||||||||||||| ||| | |||||||||||| |||||||| ||||||||||    
T  3292648 tcccaagcccggatgaaag-agagggttgtgttaggcctcaacagccaacataaaactttgtcgaatcactatgacatg 3292725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 22703892 - 22703827
Alignment:
Q  227 taaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatg 292  Q
    |||||||||||||||||||||| |||||||| | |||| ||||||| ||||||| ||||| |||||    
T  22703892 taaaaggagagggttgtgttagacctcgacagccaacacaaaactttgtcgaatttctataacatg 22703827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 25160 - 25213
Alignment:
Q  200 cctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctc 253  Q
    |||||||||||| |||||||  ||||||||||||||||  |||||| |||||||    
T  25160 cctgccaaggccggtcccaaatccgggtaaaaggagagaattgtgtcaggcctc 25213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 197 - 294
Target Start/End: Complemental strand, 51450861 - 51450764
Alignment:
Q  197 aatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| ||||||| |||||| ||||||    
T  51450861 aatcctgccaaggccggtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatatctatggcatgga 51450764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 197 - 291
Target Start/End: Original strand, 52136315 - 52136409
Alignment:
Q  197 aatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacat 291  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || | | ||| |||||||| ||||||||||||||||||    
T  52136315 aatcctgccaaggccggtcccaagcccgggtaaaaggagagggttgtgttaggccttgatagccaacgtaaaactttgtcgaatctctatgacat 52136409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 197 - 294
Target Start/End: Complemental strand, 31566356 - 31566259
Alignment:
Q  197 aatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | ||| || ||||| || ||||||||||||||||||    
T  31566356 aatcctgccaaagccggtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtagaactttgtagaatctctatgacatgga 31566259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 197 - 294
Target Start/End: Original strand, 7023147 - 7023244
Alignment:
Q  197 aatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    |||||||| |||| | ||||||||||| ||||||||||||||||||||||||||||| ||| | ||| ||||||||  || |||||||||||||||||    
T  7023147 aatcctgctaaggtcggtcccaagcccaggtaaaaggagagggttgtgttaggcctcaacagccaacgtaaaactttatcaaatctctatgacatgga 7023244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 205 - 287
Target Start/End: Original strand, 9256267 - 9256349
Alignment:
Q  205 caaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatg 287  Q
    ||||||| | || |||| ||||||||||||||||||||||||||||||| ||| | ||| ||||| || ||||||||||||||    
T  9256267 caaggccggccctaagctcgggtaaaaggagagggttgtgttaggcctcaacagccaacgtaaaattttgtcgaatctctatg 9256349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 292
Target Start/End: Complemental strand, 27215706 - 27215623
Alignment:
Q  209 gccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatg 292  Q
    |||||||||||| |||||||||||| ||||||||||| ||||||| | |   ||| |||||||| || | ||||||||||||||    
T  27215706 gccagtcccaagtccgggtaaaaggtgagggttgtgtcaggcctcaataagcaacgtaaaactttgttgtatctctatgacatg 27215623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 197 - 292
Target Start/End: Complemental strand, 20430664 - 20430569
Alignment:
Q  197 aatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatg 292  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| | ||| |||||||| || ||||||||||||||||    
T  20430664 aatcctgccaaggccggtcccaagctcgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgttgaatctctatgacatg 20430569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 207 - 294
Target Start/End: Original strand, 6079585 - 6079672
Alignment:
Q  207 aggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||   ||| |||||||| |||||||||||||||||||||    
T  6079585 aggccggtcccaagcccgggtaaaaggagagggttgcgttaggcctcgacagtcaacgtaaaactttgtcgaatctctatgacatgga 6079672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 295
Target Start/End: Complemental strand, 2545017 - 2544927
Alignment:
Q  205 caaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatggat 295  Q
    |||||||||||||||    ||||||||||||| ||||||||||| | | ||||   ||| |||||||| || |||| ||||||||||||||    
T  2545017 caaggccagtcccaaatttgggtaaaaggagaaggttgtgttagacattgacagtcaacgtaaaactttgtggaatttctatgacatggat 2544927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 26489368 - 26489429
Alignment:
Q  224 gggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctcta 285  Q
    ||||| ||||||||||||||||||| |||||||| | ||| ||||| || |||| |||||||    
T  26489368 gggtataaggagagggttgtgttagtcctcgacaaccaacgtaaaattttgtcgcatctcta 26489429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 197 - 291
Target Start/End: Complemental strand, 16008534 - 16008440
Alignment:
Q  197 aatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacat 291  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| | ||| |||||||| || |||||||||||||||    
T  16008534 aatcctgccaaggccggtcccaagcctgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgttgaatctctatgacat 16008440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 197 - 286
Target Start/End: Original strand, 4061809 - 4061898
Alignment:
Q  197 aatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctat 286  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| | ||| |||||||| ||| |||||||||    
T  4061809 aatcctgccaaggccggtcccaaacccgggtaaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcaaatctctat 4061898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 291
Target Start/End: Original strand, 35323871 - 35323965
Alignment:
Q  197 aatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacat 291  Q
    |||||| |||||| ||||||||||||| |||||||| ||| ||||| || ||||||||||| | ||| ||||| || ||||||||||||||||||    
T  35323871 aatcctaccaaggtcagtcccaagcccaggtaaaagaagacggttgggtcaggcctcgacagccaacttaaaattttgtcgaatctctatgacat 35323965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 197 - 294
Target Start/End: Complemental strand, 15218378 - 15218281
Alignment:
Q  197 aatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    ||||||||||||| | |||| |||  ||||||||||||||||||||||||| ||||||| |   ||| ||||| || |||||||||||||||||||||    
T  15218378 aatcctgccaaggtcggtcctaagttcgggtaaaaggagagggttgtgttaagcctcgatagtcaacgtaaaattttgtcgaatctctatgacatgga 15218281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 195 - 288
Target Start/End: Original strand, 3801830 - 3801924
Alignment:
Q  195 agaatcctgccaaggccagtcccaagccc-gggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatga 288  Q
    ||||||||| |||| |||||| ||||||| |||| ||||||||||| ||||||||| ||||||| | ||| |||||||| || ||||||||||||    
T  3801830 agaatcctgtcaagaccagtctcaagccccgggtgaaaggagagggctgtgttaggtctcgacaaccaacgtaaaactttgttgaatctctatga 3801924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 29520507 - 29520565
Alignment:
Q  213 gtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaact 271  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| | ||| |||||||    
T  29520507 gtcccaagcccgggtaaaaggagagggttgtgttaggcctctacaaccaacgtaaaact 29520565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 213 - 294
Target Start/End: Original strand, 35249793 - 35249878
Alignment:
Q  213 gtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacat----ctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    |||||||||||| ||||||| ||||||||||| ||||||||||||     | |||||||||||| ||||||||||||| |||||||    
T  35249793 gtcccaagcccgcgtaaaagaagagggttgtgataggcctcgacagacaaccaacataaaactttgtcgaatctctataacatgga 35249878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 213 - 295
Target Start/End: Complemental strand, 30453931 - 30453848
Alignment:
Q  213 gtcccaagcccgggtaaaaggagagggttgtgttaggc-ctcgacatctaacataaaacttcgtcgaatctctatgacatggat 295  Q
    ||||||||||||| ||||| ||||||||||||||||||  | |||| | ||| |||||||| ||||||||||| || |||||||    
T  30453931 gtcccaagcccggataaaaagagagggttgtgttaggcagttgacaaccaacgtaaaacttagtcgaatctctctgtcatggat 30453848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0710 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0710
Description:

Target: scaffold0710; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 430 - 543
Target Start/End: Original strand, 5101 - 5214
Alignment:
Q  430 aggagctgcagctacctatgtcagattcatcccttatataaagaaaaactacgattatggtgttatgatatttctgttgacctttaatttgataattgta 529  Q
    ||||||| | ||||| ||||| || ||||| |||||||||||||| || || || |||||||||||||||||||| ||||||||||||||||| ||||||    
T  5101 aggagcttctgctacttatgtaaggttcattccttatataaagaagaattatgactatggtgttatgatatttctcttgacctttaatttgatgattgta 5200  T
Q  530 tcaagttaccgcgt 543  Q
    ||||||||||||||    
T  5201 tcaagttaccgcgt 5214  T

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Target: scaffold0279 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 197 - 294
Target Start/End: Original strand, 18383 - 18480
Alignment:
Q  197 aatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    ||||||||||| ||| |||||||||||||||||||||||| |||||||||| ||||||||| | ||| |||||||| |||||||||||||||||||||    
T  18383 aatcctgccaaagccggtcccaagcccgggtaaaaggagaaggttgtgttaagcctcgacaaccaacgtaaaactttgtcgaatctctatgacatgga 18480  T

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Target: scaffold0024 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 201 - 295
Target Start/End: Complemental strand, 48350 - 48256
Alignment:
Q  201 ctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatggat 295  Q
    ||||||||||| |||||||| ||||||||||||||||||||  |||||||||||||| | |||||| |||||  |||||||||||||||||||||    
T  48350 ctgccaaggccggtcccaagtccgggtaaaaggagagggtttcgttaggcctcgacagccaacatataactttatcgaatctctatgacatggat 48256  T

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Target: scaffold0245 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 199 - 294
Target Start/End: Complemental strand, 16690 - 16595
Alignment:
Q  199 tcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    ||||||||||||| |||||||||||||||||||  |||||||||||| |||||| |||| | ||| ||||||||  | ||||||||||||||||||    
T  16690 tcctgccaaggccggtcccaagcccgggtaaaaaaagagggttgtgtcaggccttgacagccaacgtaaaactttttagaatctctatgacatgga 16595  T

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Target: scaffold0001 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 440116 - 440181
Alignment:
Q  229 aaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    |||||||||| |||||||||||||||||| | ||| |||||||| ||| |||||||||||||||||    
T  440116 aaaggagaggattgtgttaggcctcgacagccaacgtaaaactttgtcaaatctctatgacatgga 440181  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 294
Target Start/End: Complemental strand, 883625 - 883528
Alignment:
Q  197 aatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    ||||||||||||| | || |||||| | |||||||| |||| ||||||||||||||  |||   ||||||| ||||  ||||||||||||||||||||    
T  883625 aatcctgccaaggtcggttccaagctcaggtaaaagcagagagttgtgttaggccttcacagtaaacataatactttatcgaatctctatgacatgga 883528  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 290
Target Start/End: Original strand, 54529560 - 54529636
Alignment:
Q  213 gtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgaca 290  Q
    |||||||| | |||||||| ||||||||||||||||||||||||| | ||| ||| |||| |||||||| ||||||||    
T  54529560 gtcccaaggctgggtaaaaagagagggttgtgttaggcctcgacagccaacgtaacactttgtcgaatc-ctatgaca 54529636  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 294
Target Start/End: Original strand, 16000230 - 16000323
Alignment:
Q  197 aatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    |||||| ||||| || |||||||| |||||||||||||||||||||||||    |||||||   ||| |||||||| || || |||||||||||||||    
T  16000230 aatcctaccaagaccggtcccaagtccgggtaaaaggagagggttgtgtt----ctcgacagtcaacgtaaaactttgttgagtctctatgacatgga 16000323  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 294
Target Start/End: Complemental strand, 27453259 - 27453164
Alignment:
Q  197 aatcctgccaaggccagtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    |||||| |||||| |  ||||||||||| |||||||||   |||| ||||| ||||||||| | ||| |||||||| | |||||||||||||||||||    
T  27453259 aatcctaccaaggtcgatcccaagcccgagtaaaaggaa--ggttatgttatgcctcgacagccaacgtaaaactttgccgaatctctatgacatgga 27453164  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 42309193 - 42309152
Alignment:
Q  212 agtcccaagcccgggtaaaaggagagggttgtgttaggcctc 253  Q
    |||||||||||||| |||||||| ||||||||||||||||||    
T  42309193 agtcccaagcccggataaaaggatagggttgtgttaggcctc 42309152  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 38475129 - 38475065
Alignment:
Q  229 aaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgg 293  Q
    |||| ||||| |||||||||||||| | | | ||| |||||| | ||||||||||||||||||||    
T  38475129 aaagaagaggcttgtgttaggcctcaatagccaacgtaaaacgttgtcgaatctctatgacatgg 38475065  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 55770443 - 55770383
Alignment:
Q  235 gagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatggat 295  Q
    |||||||||||||| ||| ||||   |||||||||||| ||| ||||||||||||| ||||    
T  55770443 gagggttgtgttagaccttgacaaaaaacataaaactttgtccaatctctatgacaaggat 55770383  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 55834699 - 55834639
Alignment:
Q  235 gagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatggat 295  Q
    |||||||||||||| ||| ||||   |||||||||||| ||| ||||||||||||| ||||    
T  55834699 gagggttgtgttagaccttgacaaaaaacataaaactttgtccaatctctatgacaaggat 55834639  T

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Target: scaffold0050 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 70401 - 70457
Alignment:
Q  213 gtcccaagcccgggtaaaaggagagggttgtgttaggcctcgacatctaacataaaa 269  Q
    |||||||||||   |||||||||||| |||||||||||||||||| |||||||||||    
T  70401 gtcccaagcccaaataaaaggagaggattgtgttaggcctcgacagctaacataaaa 70457  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 294
Target Start/End: Complemental strand, 46833228 - 46833165
Alignment:
Q  228 aaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    |||||||||||||||||||||||||| ||    ||| |||||||| |||||||||||||||||||||    
T  46833228 aaaaggagagggttgtgttaggcctcaacc---aacgtaaaactttgtcgaatctctatgacatgga 46833165  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 30089118 - 30089189
Alignment:
Q  225 ggtaaaaggagagggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatggatt 296  Q
    ||||||||||||||||||| ||| | ||||||| ||||| |||||||| |||||||||  |||| |||||||    
T  30089118 ggtaaaaggagagggttgtattaagtctcgacagctaacgtaaaactttgtcgaatcttcatgatatggatt 30089189  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 36232115 - 36232169
Alignment:
Q  238 ggttgtgttaggcctcgacatctaacataaaacttcgtcgaatctctatgacatgga 294  Q
    |||||||||||||||||||| | |||||||||||| ||||||  |||||||||||||    
T  36232115 ggttgtgttaggcctcgacagccaacataaaactttgtcgaa--tctatgacatgga 36232169  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 295
Target Start/End: Complemental strand, 37595575 - 37595492
Alignment:
Q  213 gtcccaagcccgggtaaaaggagagggttgtgttaggcctc-gacatctaacataaaacttcgtcgaatctctatgacatggat 295  Q
    |||||||||  || |||||||||||| |||||||||||  | |||| | ||||||||||||  || ||||||||||||||||||    
T  37595575 gtcccaagcaaggataaaaggagaggattgtgttaggcagccgacaaccaacataaaacttaatcaaatctctatgacatggat 37595492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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