View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_low_27 (Length: 547)
Name: NF19786_low_27
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Original strand, 31009919 - 31010452
Alignment:
| Q |
1 |
actaaatttaaggtacttttcttttatttctttataaacatttcaagtgttttgtgtgttgtttaaaatgttgcaacagaagttggtgacaaacgtgtgg |
100 |
Q |
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| T |
31009919 |
actaaatttaaggtacttttcttttattcctttataaacatttcaagtgttttgtgtgttgtttaaattgttgcaacagaagttggtgacaaacgtgtgg |
31010018 |
T |
|
| Q |
101 |
attacattccggggaactcatcgattcgtctccaagattttccacttcatgatgcaagcttacgcagccgtagattgttagagttagatttgaataaaat |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
31010019 |
attacattccggggaactcatcaattcgtctccaagattttccacttcatgatgcaagcttacgcagccgtagattgttagagttagctttgaataacat |
31010118 |
T |
|
| Q |
201 |
gccatggatgaagaaagcacaatatctattattcccttccatatatgaaattgagcctcaagcaattgatgttttgagagaagaattttctataccaatt |
300 |
Q |
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| T |
31010119 |
gccatggatgaagaaagcacaatatctattattcccttccatatatgaaattgagcctcaagcaattgatgttttaagagaagaattttctataccaatt |
31010218 |
T |
|
| Q |
301 |
tacacaattggacctactataccgtattttagtcgcggccaaattacctctctaagcactaaccaagatgttgaacttgattatataaattggctagata |
400 |
Q |
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||||||||||||||||| ||||| |||||||||| | ||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
31010219 |
tacacaattggacctaccataccttattttagtcacaaccaaattgcctctctaagcaccaatcaagatgttgaacttgattatataaattggctagata |
31010318 |
T |
|
| Q |
401 |
atcaaccaattggttctgttctatatgtctcacaagggagttttctttcagcttcaagcgaacagatcaatgaaatcgcgaatggtttgcgcgaaagtgg |
500 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| |||||||||||| |||||||||| |
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| T |
31010319 |
atcaacccattggttctgttctatatgtctcacaagggagttttcttacagtttcaagcgaacagatcgatgaaattgcgaatggtttgtgcgaaagtgg |
31010418 |
T |
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| Q |
501 |
tgttagattcttgtggataatgcgtggagaaagt |
534 |
Q |
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| T |
31010419 |
tgttagattcttgtggataatgcgaggagaaagt |
31010452 |
T |
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