View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_low_29 (Length: 530)
Name: NF19786_low_29
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 135 - 367
Target Start/End: Original strand, 5843461 - 5843693
Alignment:
| Q |
135 |
tgttatggatgaggatgataaccaagaggaggatattggacactatgaagaagaagagctggttccaaaactaagggctaagaggaacttggtcaaacct |
234 |
Q |
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| T |
5843461 |
tgttatggatgaggataataaccaagaggaggatattggacactatggagaagaagagctggttcctaaactaagggctaagagaaacttggtcaaacct |
5843560 |
T |
|
| Q |
235 |
caacacttcaaggactttgtgatgacacctctcaaggggaggggtaagaagtgagaa-cctctagaagcttctagataatatctctgctatgagtcacca |
333 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5843561 |
caacgcttcaaggactttgtgatgacacctcccaaggggaggggtaagaagtgagaaccctctagaagcttctagataatatctctgctatgagtcacca |
5843660 |
T |
|
| Q |
334 |
tatgctgagtcatggtgttggttaagaaatgcat |
367 |
Q |
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| T |
5843661 |
tgtgctgagtcatgg-gctggttaagaaatgcat |
5843693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 135 - 367
Target Start/End: Original strand, 5849497 - 5849729
Alignment:
| Q |
135 |
tgttatggatgaggatgataaccaagaggaggatattggacactatgaagaagaagagctggttccaaaactaagggctaagaggaacttggtcaaacct |
234 |
Q |
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| T |
5849497 |
tgttatggatgaggataataaccaagaggaggatattggacactatggagaagaagagttggttcctaaactaagggctaagagaaacttggtcaaacct |
5849596 |
T |
|
| Q |
235 |
caacacttcaaggactttgtgatgacacctctcaaggggaggggtaagaagtgagaa-cctctagaagcttctagataatatctctgctatgagtcacca |
333 |
Q |
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| T |
5849597 |
caacgcttcaaggactttgtgatgacacctcccaaggggaggggtaagaagtgagaaccctctagaagcttctagataatatctctgctatgagtcacca |
5849696 |
T |
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| Q |
334 |
tatgctgagtcatggtgttggttaagaaatgcat |
367 |
Q |
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| T |
5849697 |
tgtgctgagtcatgg-gttggttaagaaatgcat |
5849729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 453 - 522
Target Start/End: Original strand, 6090134 - 6090203
Alignment:
| Q |
453 |
cttgaaccatgtcaaatgaccaaaactagacaactatgtgtttgtgctatgttttttacaagattatcaa |
522 |
Q |
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|||||| |||||||| | ||| ||||||||||||||| || ||||||||| ||||||| |||||||||| |
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| T |
6090134 |
cttgaaacatgtcaattcacctaaactagacaactatatggttgtgctatactttttacgagattatcaa |
6090203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 32605120 - 32605255
Alignment:
| Q |
1 |
tgaaaaagttgcatcatctcttatatcacgtggagattatggtcacaaatagagtatccacgtgccgccaaaagcatcaccaaatttagttgccgaacca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||| |
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| T |
32605120 |
tgaaaaagttgcatcatctcttatatcacgtggagattatggtcacaaatagagtatccacgtgccaccaaaagcatcgccaaatttagttaccgaacca |
32605219 |
T |
|
| Q |
101 |
ttgtctatgtctttcggaaaccacacaccattgctg |
136 |
Q |
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| T |
32605220 |
ttgtctatgtctttcggaaaccacacaccattgctg |
32605255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 405 - 527
Target Start/End: Original strand, 32605508 - 32605630
Alignment:
| Q |
405 |
tgtttttattggtgtttatgagtcattttagagtcattccagcaagaccttgaaccatgtcaaatgaccaaaactagacaactatgtgtttgtgctatgt |
504 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32605508 |
tgtttttattggtgtttatgagtcattttagagtcattccagcaagaccttgaaccatgtcaaatgaccaaaactagacaactatgtgtttctgctatgt |
32605607 |
T |
|
| Q |
505 |
tttttacaagattatcaagtgat |
527 |
Q |
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||||||||||||||||||||||| |
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| T |
32605608 |
tttttacaagattatcaagtgat |
32605630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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