View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19786_low_30 (Length: 522)

Name: NF19786_low_30
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19786_low_30
NF19786_low_30
[»] scaffold0031 (1 HSPs)
scaffold0031 (1-507)||(41865-42371)
[»] chr5 (1 HSPs)
chr5 (5-501)||(11055076-11055572)
[»] chr1 (1 HSPs)
chr1 (20-231)||(51226253-51226464)


Alignment Details
Target: scaffold0031 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Original strand, 41865 - 42371
Alignment:
Q  1 aataaactcaagaatcattccaaaacagtacaagaaattttcagcagccacaatttcatcaaaactaagccatgaaagtaaaatcacaccggaggccgaa 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41865 aataaactcaagaatcattccgaaacagtacaagaaattttcagcagccacaatttcatcaaaactaagccatgaaagtaaaatcacaccggaggccgaa 41964  T
Q  101 aaaagtatccctataataggcgtaccgtagcgcgaccttttggtaaagaactcaggcaacattcccctctcagccattcctagaagctgaaatgagtcgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41965 aaaagtatccctataataggcgtaccgtagcgcgaccttttggtaaagaactcaggcaacattcccctctcagccattcctagaagctgaaatgagtcgg 42064  T
Q  201 cgctcatttcagcaacaaacaatcccatattcgacaccgcagctgcagcattaagccaccatctcaaccaagctccaccaatgatcatagcaatatctga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42065 cgctcatttcagcaacaaacaatcccatattcgacaccgcagctgcagcattaagccaccatctcaaccaagctccaccaatgatcatagcaatatctga 42164  T
Q  301 aaagtatccgtcactccaagccgcgcggtccactggaaccgcaccggtgccaacaaaaagaggaaacagatatccactaacaaccaaaatcaaagcataa 400  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42165 aaagtatccgtcactccaagccgcgcggtccactggaaccgcgccggtgccaacaaaaagaggaaacagatatccactaacaaccaaaatcaaagcataa 42264  T
Q  401 aacaaacctttaggaagtgttttccttggattttcaacttcaccaacaagagtacttatagaatcccaataattaagattccaaaaaagtgtattcaaat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42265 aacaaacctttaggaagtgttttccttggattttcaacttcaccagcaagagtacttatagaatcccaataattaagattccaaaaaagtgtattcaaat 42364  T
Q  501 acaaact 507  Q
    |||||||    
T  42365 acaaact 42371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 178; Significance: 9e-96; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 5 - 501
Target Start/End: Complemental strand, 11055572 - 11055076
Alignment:
Q  5 aactcaagaatcattccaaaacagtacaagaaattttcagcagccacaatttcatcaaaactaagccatgaaagtaaaatcacaccggaggccgaaaaaa 104  Q
    ||||| |||||||| |||| ||||||||||||||| || ||||| |||||||| | ||||||||||||||| |||| ||| ||||| ||||| |||||||    
T  11055572 aactccagaatcatcccaatacagtacaagaaattctctgcagctacaatttcttgaaaactaagccatgatagtagaattacaccagaggctgaaaaaa 11055473  T
Q  105 gtatccctataataggcgtaccgtagcgcgaccttttggtaaagaactcaggcaacattcccctctcagccattcctagaagctgaaatgagtcggcgct 204  Q
    | |||||||||| |||||| ||||  || ||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||  | ||||||  |||    
T  11055472 gaatccctataagaggcgttccgtgacgagacctcttggtgaaaaactctggcaacattcccctctcagccattcctagaagctggtaagagtcgctgct 11055373  T
Q  205 catttcagcaacaaacaatcccatattcgacaccgcagctgcagcattaagccaccatctcaaccaagctccaccaatgatcatagcaatatctgaaaag 304  Q
    |||||| ||||| |||| |||||| || ||||  ||||||||||| | ||||||||||||||||||  |||| ||||||||||||||||| || || ||     
T  11055372 catttcggcaacgaacattcccatgtttgacattgcagctgcagcctgaagccaccatctcaaccacactcctccaatgatcatagcaatttcagagaaa 11055273  T
Q  305 tatccgtcactccaagccgcgcggtccactggaaccgcaccggtgccaacaaaaagaggaaacagata-tccactaacaaccaaaatcaaagcataaaac 403  Q
    || |||||| ||||   | |||| |  || ||||| |||||||| ||||  | ||||||||| |  ||  |||| ||||||||  |||||||||||||||    
T  11055272 tacccgtcagtccacaactcgcgctgaaccggaacagcaccggtaccaatcagaagaggaaagaagtacgccac-aacaaccaggatcaaagcataaaac 11055174  T
Q  404 aaacctttaggaagtgttttccttggattttcaacttcaccaacaagagtacttatagaatcccaataattaagattccaaaaaagtgtattcaaata 501  Q
    |||||||| |||||  ||||| | |||||||||||||||||| ||||||||||||| || ||||||||||| ||||||||||| || |||||||||||    
T  11055173 aaacctttgggaagatttttcttgggattttcaacttcaccagcaagagtacttatggagtcccaataatttagattccaaaacagcgtattcaaata 11055076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 231
Target Start/End: Original strand, 51226253 - 51226464
Alignment:
Q  20 ccaaaacagtacaagaaattttcagcagccacaatttcatcaaaactaagccatgaaagtaaaatcacaccggaggccgaaaaaagtatccctataatag 119  Q
    ||||||||||| ||||||||||||||||| |||||||| | |||||| | ||| ||||| |||| |||||| || || || || |  || || |||| ||    
T  51226253 ccaaaacagtataagaaattttcagcagcaacaatttcttgaaaactcaaccaagaaagcaaaaccacaccagaagctgagaacaaaataccaataagag 51226352  T
Q  120 gcgtaccgtagcgcgaccttttggtaaagaactcaggcaacattcccctctcagccattcctagaagctgaaatgagtcggcgctcatttcagcaacaaa 219  Q
    | || || || || |||||||| | |||||| ||||| | ||| || || |||||||| ||||||||||||||||||||    ||||| ||||| |||||    
T  51226353 gtgttccataacgtgacctttttgcaaagaattcaggaagcatacctctttcagccatacctagaagctgaaatgagtcactactcatctcagctacaaa 51226452  T
Q  220 caatcccatatt 231  Q
    || |||||||||    
T  51226453 cattcccatatt 51226464  T

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