View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19786_low_31 (Length: 507)
Name: NF19786_low_31
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_31 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 7 - 426
Target Start/End: Complemental strand, 37136411 - 37136008
Alignment:
| Q |
7 |
aaaggacagaattacccctccatacaaagttgagcttctctcactcactcaaaggcactccacagtccacacacacagctcccagaaagccaaggtctaa |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||| | ||||||||||||||||||||||| |
|
|
| T |
37136411 |
aaaggacagaattacccctctatacaaagttgagcttctctcactcactcaaga------cacactccacata----gctcccagaaagccaaggtctaa |
37136322 |
T |
|
| Q |
107 |
ttagacattttattattgaaagtaccttaccggaaaacggagacaccggaggagtagaaccggcgggagaagcaggtgctgatccattactctgataccc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37136321 |
ttagacattttattattgaaagtaccttaccggaaaacggagacaccggaggagtagaaccggcgggagaagcaggtgctgatccattactctgataccc |
37136222 |
T |
|
| Q |
207 |
agctggtttcattatcatgatactacgtgtcactttcattgcatcctctggtgaatccccactgtaggatctcacgtttccaccttcacccgattctgat |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37136221 |
agctggtttcattatcatgatactacgtgtcactttcattgcatcctctggtgaatccccactgtaagatctcacgtttccaccttcacccgattctgat |
37136122 |
T |
|
| Q |
307 |
cataacataaacataaaatcacaagtgtataataaactttagaataacttttaacatactacaaaaaccaccacaaatctatgcatgcatggatatattc |
406 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37136121 |
cataaca------taaaatcacaagtgtataataaactttagaataacttttaacatactacaaaaaccaccacaaatctatgcatgcatggatatattc |
37136028 |
T |
|
| Q |
407 |
agcttaaggttgatgaatca |
426 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
37136027 |
agcttaaggttgatgaatca |
37136008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 46440814 - 46440765
Alignment:
| Q |
130 |
accttaccggaaaacggagacaccggaggagtagaaccggcgggagaagc |
179 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
46440814 |
accttaccggaaaacggagacaccggagtggtagaaccggcgggagaagc |
46440765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University