View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_low_32 (Length: 503)
Name: NF19786_low_32
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 218 - 495
Target Start/End: Complemental strand, 21482014 - 21481737
Alignment:
| Q |
218 |
gaaagctaatggtctccaagaaggagatttcatagtgatatattctgatgtgaagtgtggcaaatttgtaagagccttctcttataatgttttcttttac |
317 |
Q |
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| T |
21482014 |
gaaagctaatggactccaagaaggagatttcatagtgatatattctgatgtgaagtgtggcaaatttgtaagagccttctcttataatgttttcttttac |
21481915 |
T |
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| Q |
318 |
ttaattttcatggatttggatttcctagttcccggcgtaattgaatcgagatcaaaccaaagttttaaaaaaccagactaaactcatcccattcaactaa |
417 |
Q |
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| T |
21481914 |
ttaatgttcatggatttggatttcctagttcccggcgtaattgaatcgagatcaaaccaaagttttaaaaaaccagactaaactcatcccgttcaactca |
21481815 |
T |
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| Q |
418 |
ttgaattgtgaatcctcgggttaaaccgtggttggttcaaaccgattttcatattttacattctttttaatattcttc |
495 |
Q |
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| T |
21481814 |
ttgaattgtgaatcctcgggttaaaccgtggttggttcaaaccgattttcatattttacattctttttaatattcttc |
21481737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 21482208 - 21482084
Alignment:
| Q |
19 |
gatgatacattgcgactaaaattttatcttttgattatttcttcttggagcatcagatattggcctaacaacaaaagcaggatgtatttgctagagaaca |
118 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21482208 |
gatgatacattgggactaaaattttatcttttgattatttcttcttggagcatcagatattggcctaacaacaaaagcaggatgtatttgctggagaaca |
21482109 |
T |
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| Q |
119 |
ccggtgagttattcttcttattcat |
143 |
Q |
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| T |
21482108 |
ccggtgagttattcttcttattcat |
21482084 |
T |
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