View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_low_36 (Length: 455)
Name: NF19786_low_36
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 173 - 436
Target Start/End: Complemental strand, 42006771 - 42006507
Alignment:
| Q |
173 |
ataaagagagattctagtttagcataaacatttctcaagaaaagatttcaaaaataaatatatttactttcattcattttacaggatatacaaatcgatc |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42006771 |
ataaagagagattctagtttagcataaacatttctcaagaaaagatttcaaaaataaatatatttactttcattcattttacaggata--caaatcgatc |
42006674 |
T |
|
| Q |
273 |
tttaagaaaataat---tttgggcaacagtggatagatcttaaaatgactttggcaatggatgaaagggagaattcggcttggatgagcttttgggcaac |
369 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42006673 |
tttaagaaaataataattttgggcaacagtggatagatcttaaaatgactttggcaatggatgaaagggagaattcggcttggatgagcttttgggcaac |
42006574 |
T |
|
| Q |
370 |
agcatgctacacattatggttttggaggaataaacttgtacatgatgatggttttgtcatgcctatg |
436 |
Q |
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| T |
42006573 |
agcatgctacacgttatcgttttggaggaataaacttgtacatgatgatggttttgtcatgcctatg |
42006507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 42007095 - 42006923
Alignment:
| Q |
13 |
aatataataatacagtttatgagaaagatagatgtgagtaggatattggtgatatctgcactatcaactatctccctgatcaatatcaattatgttctcc |
112 |
Q |
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| T |
42007095 |
aatataataatacagtttatgagaaagatagatgtgagtaggatattagtgatatctgcactatcaactatctccctgatcaatatcaattatgttctcc |
42006996 |
T |
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| Q |
113 |
atttcttttgagaaatgtatatacattgtgattatatgtttcgtccattcttttgacttgataaagagagatt |
185 |
Q |
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| T |
42006995 |
atttattttgagaaatgtatatacattgtgattatatgtttcgtccattcttttgacttgataaagagagatt |
42006923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 324 - 436
Target Start/End: Complemental strand, 33820073 - 33819961
Alignment:
| Q |
324 |
caatggatgaaagggagaattcggcttggatgagcttttgggcaacagcatgctacacattatggttttggaggaataaacttgtacatgatgatggttt |
423 |
Q |
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||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||| |||| ||| |
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| T |
33820073 |
caatggatgaaggggagaattcggattggatgagcttttgggcaacagcatgctactctttatggttttggaggaataagcttgtacatgttgatacttt |
33819974 |
T |
|
| Q |
424 |
tgtcatgcctatg |
436 |
Q |
| |
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|||| |||||||| |
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| T |
33819973 |
tgtcgtgcctatg |
33819961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 293 - 436
Target Start/End: Original strand, 43336913 - 43337056
Alignment:
| Q |
293 |
caacagtggatagatcttaaaatgactttggcaatggatgaaagggagaattcggcttggatgagcttttgggcaacagcatgctacacattatggtttt |
392 |
Q |
| |
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|||| ||||||||||||||| |||||| ||||||||| ||| |||||||||||| |||||||| |||| | || | ||| |||| | || ||||||| |
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| T |
43336913 |
caacggtggatagatcttaatatgactatggcaatggctgatggggagaattcggtttggatgatatttttgaaaataacatactactctttgtggtttt |
43337012 |
T |
|
| Q |
393 |
ggaggaataaacttgtacatgatgatggttttgtcatgcctatg |
436 |
Q |
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|||| ||||| |||||||||||||||| |||||||||||||||| |
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| T |
43337013 |
ggagaaataagcttgtacatgatgatgcttttgtcatgcctatg |
43337056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 416
Target Start/End: Original strand, 48875372 - 48875491
Alignment:
| Q |
297 |
agtggatagatcttaaaatgactttggcaatggatgaaagggagaattcggcttggatgagcttttgggcaacagcatgctacacattatggttttggag |
396 |
Q |
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|||| ||||||||||| ||| | |||| ||||||||| ||||||| | || ||||||||||||||||| | |||||||||| |||| ||||||||||| |
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| T |
48875372 |
agtgtatagatcttaacatgtttatggcgatggatgaaggggagaaatgggattggatgagcttttgggagagagcatgctactcattgtggttttggag |
48875471 |
T |
|
| Q |
397 |
gaataaacttgtacatgatg |
416 |
Q |
| |
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|||||| ||||| ||||||| |
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| T |
48875472 |
gaataagcttgtgcatgatg |
48875491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 305 - 436
Target Start/End: Original strand, 16541751 - 16541876
Alignment:
| Q |
305 |
gatcttaaaatgactttggcaatggatgaaagggagaattcggcttggatgagcttttgggcaacagcatgctacacattatggttttggaggaataaac |
404 |
Q |
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|||||||| |||| | |||||||||||||| |||| |||| || ||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
16541751 |
gatcttaatatgattatggcaatggatgaaggggaaaatttggtttggatgagcttttgggcaacagcatgctac----tctggttttggaggaataagt |
16541846 |
T |
|
| Q |
405 |
ttgtacatgatgatggttttgtcatgcctatg |
436 |
Q |
| |
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||| |||||||||| | |||||||||||||| |
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| T |
16541847 |
ttg--catgatgatgctgttgtcatgcctatg |
16541876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 378
Target Start/End: Complemental strand, 49077300 - 49077216
Alignment:
| Q |
294 |
aacagtggatagatcttaaaatgactttggcaatggatgaaagggagaattcggcttggatgagcttttgggcaacagcatgcta |
378 |
Q |
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||||||||||| ||||||| |||||| ||||||||||| || ||||||||| ||| |||| ||||||| ||||| ||||||| |
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| T |
49077300 |
aacagtggatatatcttaatatgactatggcaatggatcaagaggagaattcatattgaatgatcttttggacaacaacatgcta |
49077216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 436
Target Start/End: Complemental strand, 49077025 - 49076971
Alignment:
| Q |
383 |
ttatggttttggaggaataaactt-gtacatgatgatggttttgtcatgcctatg |
436 |
Q |
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|||||||||||||||||||| ||| |||||||||||| ||||||||||| |||| |
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| T |
49077025 |
ttatggttttggaggaataagctttgtacatgatgatacttttgtcatgcatatg |
49076971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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