View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19786_low_39 (Length: 444)

Name: NF19786_low_39
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19786_low_39
NF19786_low_39
[»] chr1 (2 HSPs)
chr1 (101-432)||(7743658-7743993)
chr1 (18-65)||(7743985-7744032)
[»] chr3 (1 HSPs)
chr3 (157-416)||(40865205-40865468)
[»] scaffold0132 (1 HSPs)
scaffold0132 (18-152)||(23836-23970)
[»] scaffold0387 (1 HSPs)
scaffold0387 (53-150)||(8536-8633)
[»] scaffold0211 (1 HSPs)
scaffold0211 (18-150)||(14516-14648)
[»] chr8 (2 HSPs)
chr8 (91-152)||(22163374-22163435)
chr8 (91-152)||(23784726-23784787)
[»] chr6 (1 HSPs)
chr6 (53-122)||(19483884-19483953)
[»] scaffold0547 (1 HSPs)
scaffold0547 (96-152)||(2093-2149)
[»] chr4 (1 HSPs)
chr4 (96-152)||(16818148-16818204)
[»] chr2 (1 HSPs)
chr2 (96-152)||(19311790-19311846)


Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 101 - 432
Target Start/End: Complemental strand, 7743993 - 7743658
Alignment:
Q  101 agagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgaggatccaaatgtcttctttttcacaacttctctacat----gcatgaca 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    ||||||||    
T  7743993 agagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgaggatccaaatgtcttctttttcacaacttctctaccttcctgcatgaca 7743894  T
Q  197 aatacattttgtaaagaaatggagactccaattttcaacgaaattaaacattcaacaataaaaatcatgcattcaacaggacagaaacatttcataccaa 296  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7743893 aatacattttgtaaataaatggagactccaattttcaacgaaattaaacattcaacaataaaaatcatgcattcaacaggacagaaacatttcataccaa 7743794  T
Q  297 tttgtttgcgagagcttgtaaatctatcctcggaattagtttcacggtaaccttctgccgtacattatcaacattaactacctgttgaaagggatataaa 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7743793 tttgtttgcgagagcttgtaaatctatcctcggaattagtttcacggtaaccttctgccgtacattatcaacattcactacctgttgaaagggatataaa 7743694  T
Q  397 ttaggtgacaaattaagaatagggatagaatgatga 432  Q
    ||||||||||||||||||||||||||||||||||||    
T  7743693 ttaggtgacaaattaagaatagggatagaatgatga 7743658  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 7744032 - 7743985
Alignment:
Q  18 gtttagaggctgtttccatcaagaatttcatgttatctgagagtttct 65  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||    
T  7744032 gtttagaggctgcttccatcaagaatttcatgttatctgagagcttct 7743985  T

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Target: chr3 (Bit Score: 168; Significance: 7e-90; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 157 - 416
Target Start/End: Complemental strand, 40865468 - 40865205
Alignment:
Q  157 caaatgtcttctttttcacaacttctctacat----gcatgacaaatacattttgtaaagaaa-tggagactccaattttcaacgaaattaaacattcaa 251  Q
    |||||| ||||||||||||||||||||||| |    ||||||||||||||||||||||||||| ||  ||||| ||||||||||||||||||  ||||||    
T  40865468 caaatgccttctttttcacaacttctctaccttcctgcatgacaaatacattttgtaaagaaaatgtggactcgaattttcaacgaaattaacaattcaa 40865369  T
Q  252 caataaaaatcatgcattcaacaggacagaaacatttcataccaatttgtttgcgagagcttgtaaatctatcctcggaattagtttcacggtaaccttc 351  Q
    ||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||| ||    
T  40865368 caatacaaatcatgcattcaacaagacagaaacattccataccaatttgtttgcgagagcctgtaaatctatcctcggaattagtttcactctaaccctc 40865269  T
Q  352 tgccgtacattatcaacattaactacctgttgaaagggatataaattaggtgacaaattaagaat 416  Q
    |||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||    
T  40865268 tgccgtacattatcaacatccactacctgttg-aagggatataaattaggtgacaaattaagaat 40865205  T

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Target: scaffold0132 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 23970 - 23836
Alignment:
Q  18 gtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagtaacatcttccagagcttctgtcttctg 117  Q
    |||||||||||  |||||||||  ||||||  |  ||||| |||||||||| ||| ||||||||||| |    ||||||||||||| |||||||||||||    
T  23970 gtttagaggctacttccatcaaatatttcacttgttctgatagtttcttcatctcttctgcttgcttagacacaacatcttccagaacttctgtcttctg 23871  T
Q  118 cttcagcttttgaatctcttcatccttagcttgag 152  Q
     |||| ||| ||||  |||||||| || |||||||    
T  23870 tttcatcttctgaagttcttcatcttttgcttgag 23836  T

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Target: scaffold0387 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 8536 - 8633
Alignment:
Q  53 tctgagagtttcttcaactcctctgcttgctttgcagtaacatcttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttg 150  Q
    ||||| |||||||||| ||| ||||||||||| | |  ||||||||||||| | ||||||||||| |||| ||| ||||  |||||||| || |||||    
T  8536 tctgatagtttcttcatctcttctgcttgcttagaaacaacatcttccagaacctctgtcttctgtttcatcttctgaagttcttcatcttttgcttg 8633  T

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Target: scaffold0211 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 14648 - 14516
Alignment:
Q  18 gtttagaggctgtttccatcaagaatttcatgttatctgagagtttcttcaactcctctgcttgctttgcagtaacatcttccagagcttctgtcttctg 117  Q
    |||||||||||| |||||||||  ||||||  |  ||||| |||||||||| ||| ||||| ||||| |    ||||||||||||| | |||||||||||    
T  14648 gtttagaggctgcttccatcaaatatttcacttgttctgatagtttcttcatctcttctgcctgcttagacacaacatcttccagaacctctgtcttctg 14549  T
Q  118 cttcagcttttgaatctcttcatccttagcttg 150  Q
     |||| ||| || |  |||||||| ||||||||    
T  14548 tttcatcttctgtagttcttcatctttagcttg 14516  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 22163435 - 22163374
Alignment:
Q  91 aacatcttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag 152  Q
    |||| ||||||||| |||||||||||  |||| ||| ||||  |||||||||||||||||||    
T  22163435 aacagcttccagagtttctgtcttctttttcatcttctgaagttcttcatccttagcttgag 22163374  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 23784726 - 23784787
Alignment:
Q  91 aacatcttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag 152  Q
    |||| ||||||||| |||||||||||  |||| ||| ||||  |||||||||||||||||||    
T  23784726 aacagcttccagagtttctgtcttctttttcatcttctgaagttcttcatccttagcttgag 23784787  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 19483884 - 19483953
Alignment:
Q  53 tctgagagtttcttcaactcctctgcttgctttgcagtaacatcttccagagcttctgtcttctgcttca 122  Q
    ||||| |||||||||||||| ||||||| ||| | |  ||||||||||||| | ||||||||||| ||||    
T  19483884 tctgatagtttcttcaactcttctgctttcttagaaacaacatcttccagaacctctgtcttctgtttca 19483953  T

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Target: scaffold0547 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0547
Description:

Target: scaffold0547; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 2093 - 2149
Alignment:
Q  96 cttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag 152  Q
    |||| |||| |||||||||||  |||| ||| |||| ||||||||||||||||||||    
T  2093 cttcgagagtttctgtcttctttttcatcttctgaagctcttcatccttagcttgag 2149  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 16818204 - 16818148
Alignment:
Q  96 cttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag 152  Q
    |||| |||| |||||||||||  |||| ||| |||| ||||||||||||||||||||    
T  16818204 cttcgagagtttctgtcttctttttcatcttctgaagctcttcatccttagcttgag 16818148  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 19311846 - 19311790
Alignment:
Q  96 cttccagagcttctgtcttctgcttcagcttttgaatctcttcatccttagcttgag 152  Q
    |||| |||| |||||||||||  |||| ||| |||| ||||||||||||||||||||    
T  19311846 cttcgagagtttctgtcttctttttcatcttctgaagctcttcatccttagcttgag 19311790  T

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