View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_low_41 (Length: 439)
Name: NF19786_low_41
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Complemental strand, 32319444 - 32319029
Alignment:
| Q |
18 |
aatgattgttacaatcaatcatttaaatcatcactactagaaaagatttaattatcgataaaatttatagacgaaacaaatgaatttgatctccaatttt |
117 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32319444 |
aatgattgttacaatcaataatttaaatcatcactactagaaaagatttaattatcgataaaatttatagacgaaacaaatgaatttgatctccaatttt |
32319345 |
T |
|
| Q |
118 |
gagttttcaaactgttagagaaagaattagagacaaatttcatgttccatgaatttagatttttatctatcataaatttttagactttagcaaatataag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32319344 |
gagttttcaaactgttagagaaagaattagagacaaatttcatgttccatgaatttagatttttatctatcataaatttttagactttagcaaatataag |
32319245 |
T |
|
| Q |
218 |
acattgattgtttagagaactccattgctaagtctgaactaatcaaattatggatgacatatgaacagaactaagtattattaagtttaccataaatgtt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
32319244 |
acattgattgtttagagaactccattgctaagtctgaactaatcaaattctggatgacatatggacagaaataagtattattaagtttaccataaatgtt |
32319145 |
T |
|
| Q |
318 |
tttcaaacnnnnnnngagacaaatgggtcgtataaagatacggtgtttatgtaaggtgtcgttttttgcgtgtttaaaataatacaactctgagtttaaa |
417 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
32319144 |
tttcaaacaaaaaaagagacaaatggatcgtataaagatacggtgtttatgtaaggtgtcgttttttacgtgttt-aaataatacaactctgagtttaaa |
32319046 |
T |
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| Q |
418 |
tatggcatggatctctg |
434 |
Q |
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| T |
32319045 |
tatggcatggatctctg |
32319029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 32366190 - 32365996
Alignment:
| Q |
35 |
atcatttaaatcatcactactagaaaagatttaattatcgataaaatttatagacgaaacaaatgaatttgatctccaattttgagttttcaaactgtta |
134 |
Q |
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||||||| |||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32366190 |
atcatttcaatcatcattactagaaaatatttaattatcgataaaatttatagacaaaacaaatgaatttgatctccaattttgagttttcaaattgt-- |
32366093 |
T |
|
| Q |
135 |
gagaaagaattagagacaaatttcatgttccatgaatttagatttttatctatcataaatttttagactttagcaaatataagacattgattgttta |
231 |
Q |
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||||||||||||||||||| ||||||||||||||||||| | ||||||||||| ||| |||||||| |||||||||||||||||||||||| |||| |
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| T |
32366092 |
gagaaagaattagagacaagtttcatgttccatgaattttggtttttatctataatatttttttagaatttagcaaatataagacattgattattta |
32365996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 170 - 361
Target Start/End: Original strand, 32304071 - 32304263
Alignment:
| Q |
170 |
atttagatttttatctatcataaatttttagactttagcaaatataagacattgattgtttagagaactccattgctaagtctgaactaatcaaattatg |
269 |
Q |
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|||||||||||||||||| |||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32304071 |
atttagatttttatctataataattttttagaatttagcaaatataagacattgatagtttagagaactccattgctaagtctgacctaatcaaattatg |
32304170 |
T |
|
| Q |
270 |
gatgacatatgaacagaactaagtat-tattaagtttaccataaatgtttttcaaacnnnnnnngagacaaatgggtcgtataaagatacggt |
361 |
Q |
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||||||||||| | || || ||| ||||||||||||||||||| |||||||||| ||||||||||| |||| |||||||||||| |
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| T |
32304171 |
gatgacatatgtatggatagaactatgtattaagtttaccataaatatttttcaaacacaagaagagacaaatggttcgtgtaaagatacggt |
32304263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 432
Target Start/End: Original strand, 32304335 - 32304406
Alignment:
| Q |
363 |
tttatgtaaggtgtcgttttttgcgtgtttaa--aataatacaactctgagtttaaatatggcatggatctc |
432 |
Q |
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|||||||| |||||||| | |||||||||||| ||||| || ||||| ||| |||||||| |||||||||| |
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| T |
32304335 |
tttatgtacggtgtcgtatcttgcgtgtttaaacaataacacgactctaagtgtaaatatgacatggatctc |
32304406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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