View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_low_43 (Length: 431)
Name: NF19786_low_43
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 34671729 - 34672008
Alignment:
| Q |
19 |
ctacctcggccggagggaactctattttatgataggttcaacaagttatatgagttggtagagtacaaaattacgacaatggctaatttgcattctttcg |
118 |
Q |
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| T |
34671729 |
ctacctcggctggagggaactctattttatgataggtgcaacaagttatatgagttggtagagtacaaaattacgacaatggctaatttgcattctttcg |
34671828 |
T |
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| Q |
119 |
attgaggagtgaatggtgaggcacaaaagtggtgtaggcgcctgtttgcttgggaggaagaacaagtgcgagaacttagtgggctggtaacgtcttttgt |
218 |
Q |
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| T |
34671829 |
attgaggagtgaatggtgaggcacgaaagtggtgtaggcgtctgtttgcttgggaggaagaacaagtgcgagaatttagtgggctggtaacgtcttttgt |
34671928 |
T |
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| Q |
219 |
tttagaggatgttgaggaggatatgtgggtttggcagctaatttcttccaaatgttattaattaatttcttccaaacgtt |
298 |
Q |
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| T |
34671929 |
tttacaggatgttgaggaggatatgtgggtttggcagctaatttcttccaaatgttattagttaatttcttccaaacgtt |
34672008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 406
Target Start/End: Original strand, 34671996 - 34672097
Alignment:
| Q |
319 |
tcttccaaatgttatttagtgagcaaatcgctactcgacatatgcggacct--------------gacattagttacattgtttgattaaagacaattcc |
404 |
Q |
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| T |
34671996 |
tcttccaaacgttatttagtgagcaaatcgctactcgacatatgcggaccttaatatcaactttggacattagttacattgtttggttaaagacaattcc |
34672095 |
T |
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| Q |
405 |
gt |
406 |
Q |
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|| |
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| T |
34672096 |
gt |
34672097 |
T |
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