View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_low_45 (Length: 404)
Name: NF19786_low_45
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 227 - 387
Target Start/End: Original strand, 18906729 - 18906889
Alignment:
| Q |
227 |
catcacagttatgggaagaaggaacaatatcttcaagttttttgccagtgaagatatcaataccaacaaagtgacactttgcatgtccatgctttccagt |
326 |
Q |
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| T |
18906729 |
catcacagttatgagaagaaggaacaatatcttcaagttttttgccagtgaagatatcaataccaacaaaatgacactttgcatgtccatgctttccagt |
18906828 |
T |
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| Q |
327 |
tttagaagttgaaacttcaactacctatctccaacacaaacaaaaaccataacaaataaat |
387 |
Q |
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| T |
18906829 |
tttagaagttgaaacttcaactacctatctccaacacaaacaaaaaccataacaaataaat |
18906889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 18906514 - 18906641
Alignment:
| Q |
12 |
tatactaagttaatcgaaaaataagaaatcagaagggaagttgtgaataatcttacaaatccatcctctgagatatcaatgagctgataatcagtgcgat |
111 |
Q |
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|||| |||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18906514 |
tataataagttaatcgaaaaataagaaatcaagaggtaagttgtgagtaatcttacaaatccatcctctgagatatcaatgagctgataatcagtgcgat |
18906613 |
T |
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| Q |
112 |
taacatgaggaacctgttgtaaccacac |
139 |
Q |
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| T |
18906614 |
taacatgaggaacctgttgtaaccacac |
18906641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 227 - 353
Target Start/End: Original strand, 54580702 - 54580828
Alignment:
| Q |
227 |
catcacagttatgggaagaaggaacaatatcttcaagttttttgccagtgaagatatcaataccaacaaagtgacactttgcatgtccatgctttccagt |
326 |
Q |
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| T |
54580702 |
catcacaattgtgggacgaaggaacaatatcttcaagttttttcccattgaagatatcaatagcaacaaagtgacactttgcatgtccatgctttcctgt |
54580801 |
T |
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| Q |
327 |
tttagaagttgaaacttcaactaccta |
353 |
Q |
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||| ||||| ||||| ||||| ||||| |
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| T |
54580802 |
ttttgaagtagaaacctcaacaaccta |
54580828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 227 - 353
Target Start/End: Original strand, 45277726 - 45277852
Alignment:
| Q |
227 |
catcacagttatgggaagaaggaacaatatcttcaagttttttgccagtgaagatatcaataccaacaaagtgacactttgcatgtccatgctttccagt |
326 |
Q |
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||||||||||||| || |||||||| |||||||||||||| ||| ||||||||| |||||| ||||||||||||| || ||||| || ||||||||||| |
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| T |
45277726 |
catcacagttatgagaggaaggaacgatatcttcaagtttcttggaagtgaagatgtcaatagcaacaaagtgacatttagcatgaccgtgctttccagt |
45277825 |
T |
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| Q |
327 |
tttagaagttgaaacttcaactaccta |
353 |
Q |
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||| || || ||||||||||| ||||| |
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| T |
45277826 |
tttcgaggtggaaacttcaacaaccta |
45277852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 54580562 - 54580626
Alignment:
| Q |
63 |
cttacaaatccatcctctgagatatcaatgagctgataatcagtgcgattaacatgaggaacctg |
127 |
Q |
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|||||||||||||| || ||||||||||| | |||||||||||| ||||| |||||||||||||| |
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| T |
54580562 |
cttacaaatccatcttcagagatatcaatcaactgataatcagtacgattcacatgaggaacctg |
54580626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 45277554 - 45277617
Alignment:
| Q |
63 |
cttacaaatccatcctctgagatatcaatgagctgataatcagtgcgattaacatgaggaacct |
126 |
Q |
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|||||||||||||| || ||||||||||||||||| |||||||| ||||| || |||||||||| |
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| T |
45277554 |
cttacaaatccatcttcagagatatcaatgagctggtaatcagtacgattcacgtgaggaacct |
45277617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 311
Target Start/End: Original strand, 46047738 - 46047822
Alignment:
| Q |
227 |
catcacagttatgggaagaaggaacaatatcttcaagttttttgccagtgaagatatcaataccaacaaagtgacactttgcatg |
311 |
Q |
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|||||||||| |||||| |||| || |||||||||||||| | |||||| |||||||| |||||||| ||||| || ||||| |
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| T |
46047738 |
catcacagttgtgggaaaaaggcacgatatcttcaagtttctcagcagtgaccatatcaatcccaacaaaatgacatttagcatg |
46047822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 241 - 352
Target Start/End: Complemental strand, 12829175 - 12829064
Alignment:
| Q |
241 |
gaagaaggaacaatatcttcaagttttttgccagtgaagatatcaataccaacaaagtgacactttgcatgtccatgctttccagttttagaagttgaaa |
340 |
Q |
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||||| || |||||||||||||| ||||| |||||| |||||||| |||||||||| ||||| |||||||||||||| || || || |||||||||| |
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| T |
12829175 |
gaagagggcacaatatcttcaagctttttagaagtgaaaatatcaattgcaacaaagtggcacttagcatgtccatgcttaccggtctttgaagttgaaa |
12829076 |
T |
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| Q |
341 |
cttcaactacct |
352 |
Q |
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| T |
12829075 |
cctcaacaacct |
12829064 |
T |
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