View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19786_low_46 (Length: 402)
Name: NF19786_low_46
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_46 |
 | |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 43686358 - 43685976
Alignment:
| Q |
1 |
agctggttctttgtgtaattttcacataaagtggagaagcaagaaagaacaatacagtggatataagcatgagtgctgctggaacaccaaaaccaacttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
43686358 |
agctggttctttgtgtaattttcacataaagtggagaagcaagaaagaacaagacagtggatataagcatgagtgctgctggaacaccaaaaccaattct |
43686259 |
T |
|
| Q |
101 |
ccaaccaagatgctcttggatatatactattccaaatagagctgctatgacagctatagttgtggaagcataataccaagtgaagaatatttccaaagct |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43686258 |
ccaaccaagatgatcttggatatatactattccaaatagagctgctatgacagctatagttgtggaagcataataccaagtgaagaatatttccaaagct |
43686159 |
T |
|
| Q |
201 |
ctattgttattggaattttcttttcttttaacttggtctgcaccaaatgctaaagaacatgaaatacccccatttccaattcctatcagaatcaacgcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43686158 |
ctattgttattggaattttcttttcttttaacttggtctgcaccaaatgctaaagaacatgaaataccaccatttccaattcctatcagaatcaacgcag |
43686059 |
T |
|
| Q |
301 |
agagtaacattgccatttgacctggttttgctgatatacagctttcaggtggattgctgcaagcaggaggctgtgccgctggg |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
43686058 |
agagtaacattgccatttgacctggttttgctgatatacagccttcaggtggattgctgcaagcaggaggctgcgccgctggg |
43685976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 43713682 - 43713304
Alignment:
| Q |
1 |
agctggttctttgtgtaattttcacataaagtggagaagcaagaaagaacaatacagtggatataagcatgagtgctgctggaacaccaaaaccaacttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | | |
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|
| T |
43713682 |
agctggttctttgtgtaattttcacataaagtggagaagcaagaaagaacaagacagtggatataagcatgagtgctgctggaacaccaaaaccaattct |
43713583 |
T |
|
| Q |
101 |
ccaaccaagatgctcttggatatatactattccaaatagagctgctatgacagctatagttgtggaagcataataccaagtgaagaatatttccaaagct |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| || |||||||||||||| ||||||||||||||||| | |
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|
| T |
43713582 |
ccaaccaagatgatcttggatatatactattccggtgagagctattatgacagctatagttatgaaagcataataccaactgaagaatatttccaaaacc |
43713483 |
T |
|
| Q |
201 |
ctattgttattggaattttcttttcttttaacttggtctgcaccaaatgctaaagaacatgaaatacccccatttccaattcctatcagaatcaacgcag |
300 |
Q |
| |
|
|||| |||||||| ||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||| || |||| |
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|
| T |
43713482 |
ctatagttattgggattatcttttctattaacttggtctgcaccaaatgctaaagaacatgtaataccaccatttccaattgctatcagaattaaggcag |
43713383 |
T |
|
| Q |
301 |
agagtaacattgccatttgacctggttttgctgatatacagctttcaggtggattgctgcaagcaggaggctgtgccgc |
379 |
Q |
| |
|
||| ||||||||||| |||||||||| |||||||| ||| | ||||| ||||| | ||||||||| |||| ||||||| |
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|
| T |
43713382 |
agaataacattgccaattgacctggtgttgctgattcacaaccttcagatggatggttgcaagcagaaggccgtgccgc |
43713304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 43702858 - 43702481
Alignment:
| Q |
1 |
agctggttctttgtgtaattttcacataaagtggagaagcaagaaagaacaatacagtggatataagcatgagtgctgctggaacaccaaaaccaacttt |
100 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
43702858 |
agctggttttttgtttaattttcacataaagaggagaagcaagaaagaataagacagtggatataagcatgagtattgctggaacaccaaaaccaacttt |
43702759 |
T |
|
| Q |
101 |
ccaaccaagatgctcttggatatatactattccaaatagagctgctatgacagctatagttgtggaagcataataccaagtgaagaatatttccaaagct |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| | |
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|
| T |
43702758 |
ccaaccaagatgatcttggatatatactattccagtgagagctattatgacagctatagttgtgaaagcataataccaactgaagaatatttccaaaacc |
43702659 |
T |
|
| Q |
201 |
ctattgttattggaattttcttttcttttaacttggtctgcaccaaatgctaaagaacatgaaatacccccatttccaattcctatcagaatcaacgcag |
300 |
Q |
| |
|
|| |||||| | || |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| | |||| |
|
|
| T |
43702658 |
ctgcggttattagggttatcttttctattaacttggtctgcaccaaatgctaaagaacatgaaataccaccatttccaattgctatcagaattagggcag |
43702559 |
T |
|
| Q |
301 |
agagtaacattgccatttgacctggttttgctgatatacagctttcaggtggattgctgcaagcaggaggctgtgccg |
378 |
Q |
| |
|
||| ||||||||||| |||||||||| |||||||| ||| | ||||| ||||| | |||||||||||||| |||||| |
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|
| T |
43702558 |
agaataacattgccaattgacctggtgttgctgattcacaaccttcagatggatggttgcaagcaggaggccgtgccg |
43702481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 43727584 - 43727202
Alignment:
| Q |
1 |
agctggttctttgtgtaattttcacataaagtggagaagcaagaaagaacaatacagtggatataagcatgagtgctgctggaacaccaaaaccaacttt |
100 |
Q |
| |
|
|||||||||||| ||| || || |||||||| ||||||||||||||||| | | ||| |||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43727584 |
agctggttctttttgtgatcttgacataaagaggagaagcaagaaagaaacagatagtagataaaagcatgagtgctgctggaacaccaaaaccaatttt |
43727485 |
T |
|
| Q |
101 |
ccaaccaagatgctcttggatatatactattccaaatagagctgctatgacagctatagttgtggaagcataataccaagtgaagaatatttccaaagct |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || |||||| ||||| || ||||||||| |||||||||||||| ||||||||||||||||| | |
|
|
| T |
43727484 |
ccaaccaagatgctcttggatatatacaattacagtgagagctagtatgatagaaatagttgtgaaagcataataccaactgaagaatatttccaaaacc |
43727385 |
T |
|
| Q |
201 |
ctattgttattggaattttcttttcttttaacttggtctgcaccaaatgctaaagaacatgaaatacccccatttccaattcctatcagaatcaacgcag |
300 |
Q |
| |
|
|||| ||||||| ||| |||||||| || |||||||||||||||||||||| |||||||||| ||| |||||||| ||| || ||| || || | |
|
|
| T |
43727384 |
ctatgattattgggattatcttttctattcacttggtctgcaccaaatgctatggaacatgaaagaccaccatttcctattgacatgagaccaaaggcgg |
43727285 |
T |
|
| Q |
301 |
agagtaacattgccatttgacctggttttgctgatatacagctttcaggtggattgctgcaagcaggaggctgtgccgctggg |
383 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||| |||||| || | ||||||| |||| | ||| ||| ||||||||||| |
|
|
| T |
43727284 |
agagtaacattgccatttgacctgttgttgctgatttacagccttttgttggattgttgcacggaggcggccgtgccgctggg |
43727202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 124
Target Start/End: Complemental strand, 43734977 - 43734931
Alignment:
| Q |
78 |
gctggaacaccaaaaccaactttccaaccaagatgctcttggatata |
124 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||| ||||||||||| |
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|
| T |
43734977 |
gctggaacaccaaaacctagtttccaaccaagatgatcttggatata |
43734931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 24 - 318
Target Start/End: Original strand, 24361 - 24655
Alignment:
| Q |
24 |
acataaagtggagaagcaagaaagaacaatacagtggatataagcatgagtgctgctggaacaccaaaaccaactttccaaccaagatgctcttggatat |
123 |
Q |
| |
|
|||||||| ||||||||||||||||| || | ||||||| || |||||||||||||||||| |||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
24361 |
acataaagaggagaagcaagaaagaataacaatgtggataaaaacatgagtgctgctggaactccaaaaccaattttccaaccaagatgatcttggatat |
24460 |
T |
|
| Q |
124 |
atactattccaaatagagctgctatgacagctatagttgtggaagcataataccaagtgaagaatatttccaaagctctattgttattggaattttcttt |
223 |
Q |
| |
|
|||||||| || |||||| |||| ||| ||| ||| ||||||||||||| |||| || |||||||| | ||||||||||| | || ||||| |
|
|
| T |
24461 |
atactattacagtgagagctattatggcagagatacttgcaaaagcataataccagctgaaaaacatttccaagaccctattgttattagggttatcttt |
24560 |
T |
|
| Q |
224 |
tcttttaacttggtctgcaccaaatgctaaagaacatgaaatacccccatttccaattcctatcagaatcaacgcagagagtaacattgccattt |
318 |
Q |
| |
|
| | || |||||||||||||||||||| | |||||||||| ||| ||| || ||||| || ||||| || ||||| | |||||||||||||| |
|
|
| T |
24561 |
tatatttacttggtctgcaccaaatgccatggaacatgaaacaccaccacttgcaattgaaatgagaataaaggcagatattaacattgccattt |
24655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 318
Target Start/End: Complemental strand, 25273361 - 25273067
Alignment:
| Q |
24 |
acataaagtggagaagcaagaaagaacaatacagtggatataagcatgagtgctgctggaacaccaaaaccaactttccaaccaagatgctcttggatat |
123 |
Q |
| |
|
|||||||| ||||||||||||||||| || | ||||| | || |||||||||||||||||| |||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
25273361 |
acataaagaggagaagcaagaaagaataacagtgtggacaaaaacatgagtgctgctggaactccaaaaccaattttccaaccaagatgatcttggatat |
25273262 |
T |
|
| Q |
124 |
atactattccaaatagagctgctatgacagctatagttgtggaagcataataccaagtgaagaatatttccaaagctctattgttattggaattttcttt |
223 |
Q |
| |
|
|||||||| || |||||| |||| ||| ||| ||| ||||||||||||| |||| || |||||||| | ||||||||||| | || ||||| |
|
|
| T |
25273261 |
atactattacagtgagagctattatggcagagatacttgcaaaagcataataccagctgaaaaacatttccaagaccctattgttattagggttatcttt |
25273162 |
T |
|
| Q |
224 |
tcttttaacttggtctgcaccaaatgctaaagaacatgaaatacccccatttccaattcctatcagaatcaacgcagagagtaacattgccattt |
318 |
Q |
| |
|
| | || |||||||||||||||||||| | |||||||||| ||| ||| || ||||| || ||||| || ||||| | |||||||||||||| |
|
|
| T |
25273161 |
tatatttacttggtctgcaccaaatgccatggaacatgaaacaccaccacttgcaattgaaatgagaataaaggcagatattaacattgccattt |
25273067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 133
Target Start/End: Complemental strand, 2689935 - 2689826
Alignment:
| Q |
24 |
acataaagtggagaagcaagaaagaacaatacagtggatataagcatgagtgctgctggaacaccaaaaccaactttccaaccaagatgctcttggatat |
123 |
Q |
| |
|
||||||||||||||||||||||| || || | |||||| | | ||| ||||||||||||||||||||||||| |||||| |||||||| |||||||||| |
|
|
| T |
2689935 |
acataaagtggagaagcaagaaaaaagaagaaagtggaaaagaacataagtgctgctggaacaccaaaaccaagtttccatccaagatgatcttggatat |
2689836 |
T |
|
| Q |
124 |
atactattcc |
133 |
Q |
| |
|
|||||||||| |
|
|
| T |
2689835 |
atactattcc |
2689826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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