View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_low_49 (Length: 389)
Name: NF19786_low_49
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 43926291 - 43925933
Alignment:
| Q |
18 |
aaatgggggtcatatactatgtgttgggaaaccagactgaatcttacaatgctttcaagaatgccgtctcaaagcttcgcgtcacaggagagaaaaaatc |
117 |
Q |
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| T |
43926291 |
aaatgggggtcatatactatgtgttgggaaaccagactgaatcttacaatgctttcaagaatgccgtctcaaagcttcgcgccacaggagagaaaaaatc |
43926192 |
T |
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| Q |
118 |
ggctttctttggttttgttcttaatcaaatgggtctttgttgtgtgcaacttaacgccttgagtgaggctgtcaaattattcgaagaagcgaagattgtt |
217 |
Q |
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| T |
43926191 |
ggctttctttggttttgttcttaatcaaatgggtctttgttgtgtgcaacttaacgccttgagtgaggctgtcaaattattcgaagaagcgaagattgtt |
43926092 |
T |
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| Q |
218 |
ttggaacaagagtatggtccttgtcaccctgaaactcttggcgtatatagcaatcttgctggcacatatgatgcaattggcaggtatacattttatagtt |
317 |
Q |
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| T |
43926091 |
ttggaacaagagtatggtccttgtcaccctgaaactcttggcgtatatagcaatcttgctggcacatatgatgcaattggcaggtatacattttatagtt |
43925992 |
T |
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| Q |
318 |
tgtgactgtcttcatgatattgaggcattatccaaagcaagctgtagctatttgtgatg |
376 |
Q |
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| T |
43925991 |
tgtgactgtcttcatgatattgaggcattatccaaagcaagctgtagctatttgtgatg |
43925933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 308
Target Start/End: Complemental strand, 35115268 - 35114981
Alignment:
| Q |
21 |
tgggggtcatatactatgtgttgggaaaccagactgaatcttacaatgctttcaagaatgccgtctcaaagcttcgcgtcacaggagagaaaaaatcggc |
120 |
Q |
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| T |
35115268 |
tgggggttatgtactacatgttgggaaactatactgaatcttataacactttgaagaaagcaatcgcaaaacttcgtgctattggagagaagaaatcatc |
35115169 |
T |
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| Q |
121 |
tttctttggttttgttcttaatcaaatgggtctttgttgtgtgcaacttaacgccttgagtgaggctgtcaaattattcgaagaagcgaagattgttttg |
220 |
Q |
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||||||||| ||| |||||||||| |||| ||| |||||||| | | | ||||| || || ||| | ||||||| || ||||| |||| ||||||| |
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| T |
35115168 |
cttctttggtattgctcttaatcaattggggcttgcctgtgtgcagcgttatgccttaagggaagctatagaattatttgaggaagcaaagagtgttttg |
35115069 |
T |
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| Q |
221 |
gaacaagagtatggtccttgtcaccctgaaactcttggcgtatatagcaatcttgctggcacatatgatgcaattggcaggtatacat |
308 |
Q |
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| T |
35115068 |
gaacatgagttggggccttatcaccctgaaacgcttggagtatatagtaatcttgcaggcacgtacgacgcaattggaaggtacacat |
35114981 |
T |
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