View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_low_50 (Length: 385)
Name: NF19786_low_50
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 16 - 370
Target Start/End: Complemental strand, 130249 - 129895
Alignment:
| Q |
16 |
attggagatttatttaatgttatgagtattgccttgttatctttcatgcccataaatgtacctggttttgcatacaacaaagcattaaaggttcgttact |
115 |
Q |
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| T |
130249 |
attggagatttatttaatgttatgagtattgccttgttatctttcatgcccataaatgtacctggttttgcatacaacaaagcattaaaggttcgttact |
130150 |
T |
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| Q |
116 |
tctatttcatattccataaggactttctatttatgaatatgtctgaatattttattctcacttttcatggctacttcaggcacgtatggagtttgtcaaa |
215 |
Q |
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| T |
130149 |
tctatttcatattccataaggactttctatttatgaatatgtctgaatattttattctcacttttcatggctacttcaggcacgtatggagtttgtcaaa |
130050 |
T |
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| Q |
216 |
ataattgaaaatattatttgtggaaggagaatggcgataaaaaatggacaaattggagaaaataataatttgttagacattattttggaaaccaaagacg |
315 |
Q |
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| T |
130049 |
ataattgaaaatattatttgtggaaggagaatggcgataaaaaatggacaaattggagaaaataataatttgttagacattattttggaaaccaaagacg |
129950 |
T |
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| Q |
316 |
aaaggggtgaaaaattggaggataaggacattattgacttactgatagcctttct |
370 |
Q |
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| T |
129949 |
aaaggggtgaaaaattggaggataaggacattattgacttactgatagcctttct |
129895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 150081 - 149729
Alignment:
| Q |
17 |
ttggagatttatttaatgttatgagtattgccttgttatctttcatgcccataaatgtacctggttttgcatacaacaaagcattaaaggttcgttactt |
116 |
Q |
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| T |
150081 |
ttggagatttgtttaatgttatgtgtattgcattgttctctttggtgcccataaatgtacctggttttgcttacaacaaagcattaaaggttcgttaatt |
149982 |
T |
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| Q |
117 |
ctatttcatattccataaggact-------ttctatttatgaatatgtctgaatattttattctcacttttcatggctacttcaggcacgtatggagttt |
209 |
Q |
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| T |
149981 |
atattttctactccattttttctactataattattgttatgaatatctctgaattttttatttttacttttcatggctaatttaggcacgtatgaagttt |
149882 |
T |
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| Q |
210 |
gtcaaaataattgaaaatattatttgtggaaggagaatggcgataaaaaatggacaaattggagaaaataataatttgttagacattattttggaaacca |
309 |
Q |
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| T |
149881 |
gtcaagatagtgcaatatattatttatgaaaggagaatgacgataaaaaatggacaaaatgggaaaaataatgatttgttagacattattttgcaaatca |
149782 |
T |
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| Q |
310 |
aagacgaaaggggtgaaaaattggaggataaggacattattgacttactgata |
362 |
Q |
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| T |
149781 |
aagacgaaagtggtgaaaaatttgaggataaggacattattgacttactgata |
149729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 146 - 358
Target Start/End: Original strand, 10306012 - 10306224
Alignment:
| Q |
146 |
ttatgaatatgtctgaatattttattctcacttttcatggctacttcaggcacgtatggagtttgtcaaaataattgaaaatattatttgtggaaggaga |
245 |
Q |
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| T |
10306012 |
ttatgaatttgtctggattttttattctcacttttcatggctaatataggcgcgcaagaagtttgaaaaaatagttcaatatattattcatgaaagaaga |
10306111 |
T |
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| Q |
246 |
atggcgataaaaaatggacaaattggagaaaataataatttgttagacattattttggaaaccaaagacgaaaggggtgaaaaattggaggataaggaca |
345 |
Q |
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||||||| ||||||||| ||||||| ||||||||| |||||||||||| | ||||||||| ||| |||||||||||||||||||| || |||||||| | |
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| T |
10306112 |
atggcgacaaaaaatggtgaaattggggaaaataatgatttgttagacaatcttttggaaatcaatgacgaaaggggtgaaaaatttgaagataaggata |
10306211 |
T |
|
| Q |
346 |
ttattgacttact |
358 |
Q |
| |
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| T |
10306212 |
ttgttgatttact |
10306224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 10 - 122
Target Start/End: Original strand, 10304511 - 10304623
Alignment:
| Q |
10 |
aagaatattggagatttatttaatgttatgagtattgccttgttatctttcatgcccataaatgtacctggttttgcatacaacaaagcattaaaggttc |
109 |
Q |
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||||| |||||||| ||||||||||||||||||| ||| ||||| |||| ||||||||||||| |||||| ||||| | ||| | |||||||||||||| |
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| T |
10304511 |
aagaaaattggagaattatttaatgttatgagtaatgcattgttcactttgatgcccataaatgcacctggctttgctttcaagagagcattaaaggttc |
10304610 |
T |
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| Q |
110 |
gttacttctattt |
122 |
Q |
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| T |
10304611 |
gttacttctattt |
10304623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 3959300 - 3959203
Alignment:
| Q |
21 |
agatttatttaatgttatgagtattgccttgttatctttcatgcccataaatgtacctggttttgcatacaacaaagcattaaaggttcgttacttct |
118 |
Q |
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|||||||||| |||||||| ||| ||||||||| ||||| |||||||||||||||||||||||||| | |||||||||| | |||||||||||||||| |
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| T |
3959300 |
agatttatttgatgttatgggtagtgccttgttctctttgatgcccataaatgtacctggttttgctttcaacaaagcactcaaggttcgttacttct |
3959203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 146 - 362
Target Start/End: Complemental strand, 3959147 - 3958931
Alignment:
| Q |
146 |
ttatgaatatgtctgaatattttattctcacttttcatggctacttcaggcacgtatggagtttgtcaaaataattgaaaatattatttgtggaaggaga |
245 |
Q |
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| T |
3959147 |
ttatgaatatgtttgaatttactattctaacattgcatgactaatttaggcacgtaagaagtttgccaaaatagttcaaaatattattgatgaaaggaga |
3959048 |
T |
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| Q |
246 |
atggcgataaaaaatggacaaattggagaaaataataatttgttagacattattttggaaaccaaagacgaaaggggtgaaaaattggaggataaggaca |
345 |
Q |
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||| | |||| | ||||||| || ||||| || ||||| || ||||| ||||||||| || |||||| ||||||||||||||||| || |||| |
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| T |
3959047 |
atgatggcaaaagaaagacaaatcggtgaaaagaaagatttgataaacattcttttggaaatgaatgacgaagcaggtgaaaaattggaggacaaagaca |
3958948 |
T |
|
| Q |
346 |
ttattgacttactgata |
362 |
Q |
| |
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||||||||||||||||| |
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| T |
3958947 |
ttattgacttactgata |
3958931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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