View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_low_51 (Length: 380)
Name: NF19786_low_51
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 39627847 - 39627480
Alignment:
| Q |
1 |
aaaaggacaagccaaatagagagacagatatcacgtgccatacatagacgagaaacagagctgtaagtggcgacgatagcagggcaagataccagctata |
100 |
Q |
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| T |
39627847 |
aaaagtacaagcaaaatagagagacagatatcacgtgccatacatagacgagaaacatagctgtaagtggcgacgatagcagggcaagataccagctata |
39627748 |
T |
|
| Q |
101 |
ctccacaactaaatataagatctaaatcatttgataaaatctaatcacagttcatcttcatataacagtaggttgtagctgtaagacacaggaaaatact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39627747 |
ctccacaactaaatataagatctaaatcatttgataaaatctaatcacagttcatcttcatataacagtaggttgtagctgcaagacacaggaaaatact |
39627648 |
T |
|
| Q |
201 |
ttcgactaaacaaccataagtaatctcatgataacaaaaagaaaataaatatggacatttttccgtattatatgaacataaccgattttataagttatac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39627647 |
ttcgactaaacaaccataagtaatctcatgataacaaaaagaaaataaatatggacatttttccgtattatatgaacataaccgattttataagttatac |
39627548 |
T |
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| Q |
301 |
cgcttgaagcaaaaaacatatggaagctgtggctcatgtataaaagcttagaacaataatatatatat |
368 |
Q |
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| T |
39627547 |
cacttgaagcaaaaaaaatatggaagttgtggctcatgtataaaagcttagaacaataatatatatat |
39627480 |
T |
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