View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_low_55 (Length: 368)
Name: NF19786_low_55
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_55 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 159 - 368
Target Start/End: Complemental strand, 48649136 - 48648936
Alignment:
| Q |
159 |
tcatcaaaatcaaccagaaagtaagtttgtaaatggtctgtacctgtacgtaaactaagtttggttctatttgcaaccttgtctatgtgacttatttaca |
258 |
Q |
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| T |
48649136 |
tcatcaaaatcaaccagaaagtaagtttgtaaatggtctgtac------gtaaactaagtttggttctatttgcaaccttgtctatgtgacttatttaca |
48649043 |
T |
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| Q |
259 |
cactaatattcttgaaatatactctagaaaaagcttaaaagaggccgttgtatttagtcaaaaagaagatgccattggccattacaaatcacccagcagt |
358 |
Q |
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| T |
48649042 |
cacta---ttcttgaaatatactctagaaaaagcttaaaagagtccgttgtatttagtcaaaaagaagatgccattggccattacaaatcacccagcagt |
48648946 |
T |
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| Q |
359 |
taattggccc |
368 |
Q |
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| T |
48648945 |
taattggccc |
48648936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 11 - 164
Target Start/End: Complemental strand, 48649370 - 48649216
Alignment:
| Q |
11 |
tgcaactaaaaacaaacgctgactactatatatatagttgaattatacaacaacatctataggtattcattgagactaagatattgtttaccttaaacaa |
110 |
Q |
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||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
48649370 |
tgcaactaacaacaaactctgactactatatatatagttgaattatacaacaacatctataggtattcattgagactaagatcttgtttaccttaaacaa |
48649271 |
T |
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| Q |
111 |
ataagagcattaat--nnnnnnnccagagcatcataatttagttcaaacatcatca |
164 |
Q |
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| T |
48649270 |
ataagagcattaataaaaaaaaaccagagcatcataa-ttagttcaaacatcatca |
48649216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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