View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_low_57 (Length: 353)
Name: NF19786_low_57
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 21 - 347
Target Start/End: Complemental strand, 5300041 - 5299715
Alignment:
| Q |
21 |
gattagtagatttattgaactgagacttgaagtatcagatttgagctataaaaacttactgaagaaaattattttcgaagtagataagaactagccctca |
120 |
Q |
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| T |
5300041 |
gattagtagatttattgaactgagacttgaagtatcagatttgagctataaaaacttactgaagaaaattattttcgaagtagataagaactagccctca |
5299942 |
T |
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| Q |
121 |
agggcctgcagcaaagtttcaaaggatgcggctaaactttgatatgtcatttggaaatgtagttatcacttggtatgtgcaactatcaatacattgatac |
220 |
Q |
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| T |
5299941 |
agggcctgcagcaaagtttcaaaggatgtggctaaactttgatatgtcatttggaaatgtagttatcacttggtatgtgcaactatcaatacattgatac |
5299842 |
T |
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| Q |
221 |
aaatgattgtttccttttgttgatttgtagagcaaggaaaagagtataatagaggtgtcacaaattagttgaaattattgtctattttcaccccacatga |
320 |
Q |
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| T |
5299841 |
aaatgattgtttccttttgttgatttgtagagcaaggaaaagagtataatagaggtgtcacaaattagttgaaattattgtctattttcaccccacatga |
5299742 |
T |
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| Q |
321 |
ttcctccgtcgatataatattcttcga |
347 |
Q |
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| T |
5299741 |
ttcctccgtcaatataattttgttcga |
5299715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 20667355 - 20667404
Alignment:
| Q |
221 |
aaatgattgtttccttttgttgatttgtagagcaaggaaaagagtataata |
271 |
Q |
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| T |
20667355 |
aaatgattgtttccttc-gctgatttgtagagcaaggaaatgagtataata |
20667404 |
T |
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