View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19786_low_6 (Length: 741)
Name: NF19786_low_6
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 248 - 724
Target Start/End: Complemental strand, 17131689 - 17131213
Alignment:
| Q |
248 |
cattagtttgggcaattgcccccaatctaatgtaagtagagatatatgctcgtgcacattcattgatttcctataaatgtgactataatgaaaattgatg |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
17131689 |
cattagtttgggcaattgcccccaatctaatgtaagtagagatatgtgctcgtgcacattcattgatttccaataaatgtgactataacgaaaattgatg |
17131590 |
T |
|
| Q |
348 |
gaatttgtaaaccgttgaccgagtagtttcttctagtccaagcaacacttatattgttagaaaatgccataattgcaatctcaaaatcttggttaagcca |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17131589 |
gaatttgtaaaccgttgaccgagtagtttcttctagtccaagcaacacttatattgttagaaaatgccataattgcaatctcagaatcttggttaagcca |
17131490 |
T |
|
| Q |
448 |
tatattttagtccaaccttccatcttggccttccaaggacggatgcatattgtagcgtatgtgggcttgtggctaaatatagacaaagtttttagannnn |
547 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17131489 |
tatactttagtccaaccttccatcttggccttctagggatggatgcatattgtagcatatgtgggcttgtggctaaatatagacaaagtttttagatttt |
17131390 |
T |
|
| Q |
548 |
nnnaggaagtaaaatatatcgatagttaacatttttatcatatgatgtacatttatcattgtttctcttttgacccacatctatatcatataatatcgtt |
647 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17131389 |
tttaggaagtaaaatataccaatagttaacatttttatcatatgacgtacatttatcattgtttctcttttgacccacatctatatcatataatatcgtt |
17131290 |
T |
|
| Q |
648 |
cacaaaattgttcaaaatttctaaatccgtcatagttttcgatattgatagcaaagcatgtgacaagaatcccttga |
724 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17131289 |
cacaaatttgttcaaaatttctagatccgtcatagttttcgatattgatagcaaagcatgtgacaagaatcccttga |
17131213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 2 - 99
Target Start/End: Complemental strand, 17131944 - 17131848
Alignment:
| Q |
2 |
catccttgaacaaatttgaaggttgtgggataatgatgaaatgtattttatcctattgaattccattcccaaatagtttaagtaatctaaacaatgga |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17131944 |
catccttgaacaaatttgaaggttgtgggatg-tgatgaaatgtattttatcctattgaattccattcccaaatagtttaagtaatctaaacaatgga |
17131848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University