View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_low_62 (Length: 330)
Name: NF19786_low_62
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 8e-86; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 39636747 - 39636928
Alignment:
| Q |
13 |
aatattaaacaaaagtactaaaacacacaatacactatcaatttgataatttaggctccgtttggaagcgtagggaggggagagaagggatttgggaaga |
112 |
Q |
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| T |
39636747 |
aatattaaacaaaagtactaaaacacacaatacactatcaatttgataatttaggctccgtttggaagcgtagggaggggagagaagggatttgggaaga |
39636846 |
T |
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| Q |
113 |
aaaacaaaagaggcattttaactactatttcaaatttattagccaattgagtcaaaccacttgactataatctaagtggatctg |
196 |
Q |
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| T |
39636847 |
aaaac--aagaggcattttaactactatttcaaatttattagccaattgaatcaaaccacttgattatagtctaagtggatctg |
39636928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 190 - 330
Target Start/End: Original strand, 39640428 - 39640568
Alignment:
| Q |
190 |
ggatctgatatgttaatcaaattgtaaacaataacgacaaactttggtatagtgcttataggcattgttcctactgttctctacaaaaaatatagtatga |
289 |
Q |
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| T |
39640428 |
ggatatgatatgttaatcaaattgtaaacaataacgacaaactttggtatagtgcttataggcattgttcctactgttctctactaaaaatatagtatga |
39640527 |
T |
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| Q |
290 |
ctgtcatcaataactttaaaaggatgtcttttttatataaa |
330 |
Q |
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| T |
39640528 |
ccgtcaccaataatgttaaaaggatgtcttttttatataaa |
39640568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 273
Target Start/End: Complemental strand, 39311324 - 39311280
Alignment:
| Q |
228 |
aaactttggtatagtgcttataggcattgttcctactgttctctac |
273 |
Q |
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| T |
39311324 |
aaactttggtatagtgct-ataggcactgttcctactgttctctac |
39311280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 34806741 - 34806682
Alignment:
| Q |
252 |
cattgttcctactgttctctacaaaaaatatagtatgactgtcatcaataactttaaaag |
311 |
Q |
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| T |
34806741 |
cattgttcctattattttctactaaaaaaatagtatgactgtcaccaataattttaaaag |
34806682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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