View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_low_69 (Length: 291)
Name: NF19786_low_69
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_69 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 128 - 291
Target Start/End: Original strand, 42324876 - 42325039
Alignment:
| Q |
128 |
ggcatttttcaaccattaaaatacctaccaaatgtagcatctgttgttccaggaatatctgtcacaatcctgtattaaataaatacaacagaatttaatc |
227 |
Q |
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| T |
42324876 |
ggcatttttcaaccattaaaatacctaccaaatgtagcatctgttgttccaggaatatctgtcacaatcctgtattaaataaatacaacagaatttaatc |
42324975 |
T |
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| Q |
228 |
aaacaaaataactggttaatttctagatatatggtactatatctcattatatattatatttacc |
291 |
Q |
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| T |
42324976 |
aaacaaaataactggttaatttctagatatatggtactatatctcattatatattatatttacc |
42325039 |
T |
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Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 42324749 - 42324848
Alignment:
| Q |
13 |
aacctgtgtatacctatatttggctttggtatctcatagctcactacttctttccctgtgtgttttacaatttcaatatgtcattatattctctctcatc |
112 |
Q |
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| T |
42324749 |
aacctgtgtatacctatatttggctttggtatctcatagctcactacttctttccctgtgtgtgatacaatttcaatatgtcattatattctctctcatc |
42324848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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