View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_low_73 (Length: 285)
Name: NF19786_low_73
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_73 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 285
Target Start/End: Complemental strand, 48654715 - 48654447
Alignment:
| Q |
21 |
agagaggaattgataatatatacttatgtgaaaggaataaatgtgaaatattggttgaggagtnnnnnnnn-gtaggacctaccgcgtcctcttactaaa |
119 |
Q |
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| T |
48654715 |
agagaggaattgata---tatacttatgtgaaaggaataaatgtgaaatattggttgaggagtaaaaaaaaagtaggacctaccgcgtcctcttactaaa |
48654619 |
T |
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| Q |
120 |
tgcaccaccctgcctgtgactttagaagcataagtccatttgctactgcacactctttttacgctcatttcgatcaacacgtttagagctaagaccttca |
219 |
Q |
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| T |
48654618 |
tgcaccaccctgcctgtgactttagaagcataagtccatttgctactgcacactctttttacgctcatttcgatcaacacgtttagagctaagaccttca |
48654519 |
T |
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| Q |
220 |
ttcaattcaaatt------caaaatccaagttattcacacacacgaaccatcatcatttataagcaagcaca |
285 |
Q |
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| T |
48654518 |
ttgaattcaaattcaaattcaaaatccaagttattcacacacacgaaccatcatcatttataagcaagcaca |
48654447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 267
Target Start/End: Complemental strand, 48646143 - 48646027
Alignment:
| Q |
146 |
agcataagtccatttgctactgcacactctttttacgctcatttcgatcaacacgtttagagctaagaccttcattcaattcaaattcaaaatccaagtt |
245 |
Q |
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| T |
48646143 |
agcataagttcatttgctactccacgctctttttacgctctatttgatcaacacgtttagagctaagaccttcattcaa-----aatcaaaatacaattt |
48646049 |
T |
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| Q |
246 |
attcacacacacgaaccatcat |
267 |
Q |
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| T |
48646048 |
attcacacacaagagccatcat |
48646027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 191 - 272
Target Start/End: Complemental strand, 8146439 - 8146360
Alignment:
| Q |
191 |
gatcaacacgtttagagctaagaccttcattcaattcaaattcaaaatccaagttattcacacacacgaaccatcatcattt |
272 |
Q |
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| T |
8146439 |
gatcaacacgtttagagctaagaccttcattcaattcaaattcaaaatccaagttattcac--acacgagccatcatcattt |
8146360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 195 - 272
Target Start/End: Complemental strand, 48570272 - 48570197
Alignment:
| Q |
195 |
aacacgtttagagctaagaccttcattcaattcaaattcaaaatccaagttattcacacacacgaaccatcatcattt |
272 |
Q |
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| T |
48570272 |
aacacgtttagagctaagaccttcattcaattcaaattcaaaatccaagttattcac--acacgagccatcatcattt |
48570197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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