View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_low_80 (Length: 275)
Name: NF19786_low_80
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_80 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 7114641 - 7114887
Alignment:
| Q |
13 |
aatatatgtatttatgctttacctagttagttgaaataggggattcactcattaccacttaccagttacaacaaaaggcaaaacttgccttcaaatcaaa |
112 |
Q |
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| T |
7114641 |
aatatatgtatttatgctttacctagttagttgaaataggagattcactcattaccacttaccagttacaacaaaatgcaagacttgccttcaaatcaaa |
7114740 |
T |
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| Q |
113 |
catacaatgaataatctaacatattttgttagaagtgcatataggaaacaaaagaaaataaaatcagggcaatgctgatatatctatcagataaatatga |
212 |
Q |
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| T |
7114741 |
catacaatcaataatctaacatattttgttagaagtgcatataggaaacaaaagaaaataaaatcagggcaatgctgatatatctatcagataaatatga |
7114840 |
T |
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| Q |
213 |
ttgaagaacatgtacatcaataagaattt-tgacaagaccttgttca |
258 |
Q |
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| T |
7114841 |
ttgaagaacatgtacatcaataagaatttgtgacaagatcttgttca |
7114887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 136 - 241
Target Start/End: Original strand, 7101100 - 7101203
Alignment:
| Q |
136 |
ttttgttagaagtgcatataggaaacaaaagaaaataaaatcagggcaatgctgatatatctatcagataaatatgattgaagaacatgtacatcaataa |
235 |
Q |
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| T |
7101100 |
ttttgttagaagtgcaaataggaaacaa--gaaaataaaatcatggcaatgttgatatatctatcagataaaaacgatcgaagcacatgaacatcaatac |
7101197 |
T |
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| Q |
236 |
gaattt |
241 |
Q |
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|||||| |
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| T |
7101198 |
gaattt |
7101203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 7100688 - 7100778
Alignment:
| Q |
19 |
tgtatttatgctttacctagttagttgaaataggggattcactcattaccacttaccagttacaacaaaaggcaaaacttgccttcaaatcaaacata |
116 |
Q |
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| T |
7100688 |
tgtatttatgctttacctacttaattgaaataggggctccactc-------gttaccagttacagcaaaatgcaagacttgccttcaactcaaacata |
7100778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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