View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19786_low_82 (Length: 270)

Name: NF19786_low_82
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19786_low_82
NF19786_low_82
[»] chr3 (3 HSPs)
chr3 (1-249)||(33726757-33727005)
chr3 (150-196)||(21754252-21754298)
chr3 (142-196)||(53855745-53855799)
[»] chr6 (4 HSPs)
chr6 (121-196)||(2231092-2231167)
chr6 (135-185)||(31694734-31694784)
chr6 (150-182)||(1912521-1912553)
chr6 (152-196)||(21869879-21869923)
[»] chr1 (2 HSPs)
chr1 (152-196)||(6025971-6026015)
chr1 (123-195)||(392325-392397)
[»] chr7 (3 HSPs)
chr7 (151-193)||(39417777-39417819)
chr7 (153-190)||(1109356-1109393)
chr7 (130-195)||(28613246-28613311)
[»] chr8 (1 HSPs)
chr8 (151-196)||(45371099-45371144)
[»] chr5 (1 HSPs)
chr5 (151-195)||(7477556-7477600)
[»] chr4 (1 HSPs)
chr4 (151-195)||(2843583-2843627)


Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 33726757 - 33727005
Alignment:
Q  1 tcctaatgatgaaacaattgacatatcccaatgcatgctaaagttagcattgtttagaatagagatacttgacatcagtgttgttaaaatgtagctagag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33726757 tcctaatgatgaaacaattgacatatcccaatgcatgctaaagttagcattgtttagaatagagatacttgacatcagtgttgttaaaatgtagctagag 33726856  T
Q  101 taccgctatagagcgataagcctataatgtagcagaatatagacagactgctattgttccgcgatatactatttagtacaaaatggtgtctaatagacta 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33726857 taccgctatagagcgataagcctataatgtagcagaatatcgacagactgctattgttccgcgatatactatttagtacaaaatggtgtctaatagacta 33726956  T
Q  201 tagaggcgttatcggttgcatagtggaattcgaccaaattgttgttttc 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33726957 tagaggcgttatcggttgcatagtggaattcgaccaaattgttgttttc 33727005  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 21754252 - 21754298
Alignment:
Q  150 gctattgttccgcgatatactatttagtacaaaatggtgtctaatag 196  Q
    ||||||||||||||||| ||||||||||||||| || |||| |||||    
T  21754252 gctattgttccgcgatacactatttagtacaaattgttgtcaaatag 21754298  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 53855799 - 53855745
Alignment:
Q  142 gacagactgctattgttccgcgatatactatttagtacaaaatggtgtctaatag 196  Q
    |||| ||||||||||||| || |||| ||||||||||||||||| |||| |||||    
T  53855799 gacaaactgctattgttctgcaatatgctatttagtacaaaatgttgtcaaatag 53855745  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 2231167 - 2231092
Alignment:
Q  121 cctataatgtagcagaatatagacagactgctattgttccgcgatatactatttagtacaaaatggtgtctaatag 196  Q
    ||||||| |||||||||| | |||| |||||| |||| | ||||||| ||||||||||||||||| |||| |||||    
T  2231167 cctataacgtagcagaattttgacaaactgcttttgtcctgcgatatgctatttagtacaaaatgttgtccaatag 2231092  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 185
Target Start/End: Complemental strand, 31694784 - 31694734
Alignment:
Q  135 gaatatagacagactgctattgttccgcgatatactatttagtacaaaatg 185  Q
    |||| |||||| ||||||||||||| | |||| ||||||||||||||||||    
T  31694784 gaatttagacaaactgctattgttctgtgatacactatttagtacaaaatg 31694734  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 1912553 - 1912521
Alignment:
Q  150 gctattgttccgcgatatactatttagtacaaa 182  Q
    |||||||||| ||||||||||||||||||||||    
T  1912553 gctattgttctgcgatatactatttagtacaaa 1912521  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 21869879 - 21869923
Alignment:
Q  152 tattgttccgcgatatactatttagtacaaaatggtgtctaatag 196  Q
    |||||||||| |||| |||||||||||||||||| |||| |||||    
T  21869879 tattgttccgtgatacactatttagtacaaaatgttgtcaaatag 21869923  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 6026015 - 6025971
Alignment:
Q  152 tattgttccgcgatatactatttagtacaaaatggtgtctaatag 196  Q
    |||||||||||||||| ||||||||||||||||| |||| |||||    
T  6026015 tattgttccgcgatatgctatttagtacaaaatgttgtcaaatag 6025971  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 392397 - 392325
Alignment:
Q  123 tataatgtagcagaatatagacagactgctattgttccgcgatatactatttagtacaaaatggtgtctaata 195  Q
    ||||||| |||||||| |  ||| |||||||||||||||||||| || || ||||||||| || |||| ||||    
T  392397 tataatgcagcagaattttaacaaactgctattgttccgcgatacacaatatagtacaaagtgttgtcaaata 392325  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 39417777 - 39417819
Alignment:
Q  151 ctattgttccgcgatatactatttagtacaaaatggtgtctaa 193  Q
    ||||||||||||||||| |||| |||||||||||| |||||||    
T  39417777 ctattgttccgcgatatgctatatagtacaaaatgttgtctaa 39417819  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 1109393 - 1109356
Alignment:
Q  153 attgttccgcgatatactatttagtacaaaatggtgtc 190  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  1109393 attgttccgcgatacactatttagtacaaaatgttgtc 1109356  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 28613311 - 28613246
Alignment:
Q  130 tagcagaatatagacagactgctattgttccgcgatatactatttagtacaaaatggtgtctaata 195  Q
    ||||||||| | |||| || ||||||||||| ||||| ||||| |||||||||||| |||| ||||    
T  28613311 tagcagaatttggacaaacggctattgttccacgatacactatatagtacaaaatgttgtcaaata 28613246  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 45371144 - 45371099
Alignment:
Q  151 ctattgttccgcgatatactatttagtacaaaatggtgtctaatag 196  Q
    |||||||||||| |||| ||||||||||||||||| |||| |||||    
T  45371144 ctattgttccgcaatatgctatttagtacaaaatgttgtcaaatag 45371099  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 7477600 - 7477556
Alignment:
Q  151 ctattgttccgcgatatactatttagtacaaaatggtgtctaata 195  Q
    ||||||||||||||| |||||||||||||||| || |||| ||||    
T  7477600 ctattgttccgcgatttactatttagtacaaagtgttgtcaaata 7477556  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 2843627 - 2843583
Alignment:
Q  151 ctattgttccgcgatatactatttagtacaaaatggtgtctaata 195  Q
    ||||||||| |||||| |||||||||||||||||| |||| ||||    
T  2843627 ctattgttctgcgatacactatttagtacaaaatgttgtcaaata 2843583  T

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