View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19786_low_84 (Length: 266)
Name: NF19786_low_84
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_84 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 33 - 249
Target Start/End: Complemental strand, 32605034 - 32604805
Alignment:
| Q |
33 |
caaaccaatctggaaccacatgaaagcattttcgaatcctatttataatttagggataaaaatagttcaagcctaatatgaaattatata---------- |
122 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32605034 |
caaaccaatatggaaccacatgaaagcattttcgaatcctatttataatttagggataaaaatagttcaagcctaatatgaaattatatatgttggaaca |
32604935 |
T |
|
| Q |
123 |
---gaatatactagtgcgtgagttgaaaaattctggaaattcctcatagagctcacacaatattaatgtttataaggtggaggtaggatccttgaggtga |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32604934 |
ctagaatatactagtgcgtgagttgaaaaattctggaaattcctcatagagctcacacaatattaatgtttataaggtggaggtaggatccttgaggtga |
32604835 |
T |
|
| Q |
220 |
gacacaagggatgtccatttttatgaatgg |
249 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |
|
|
| T |
32604834 |
gacacaagagatgtccatttttatgaatgg |
32604805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University