View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19786_low_86 (Length: 263)

Name: NF19786_low_86
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19786_low_86
NF19786_low_86
[»] chr1 (20 HSPs)
chr1 (1-257)||(25017223-25017479)
chr1 (1-257)||(40864801-40865057)
chr1 (1-133)||(48606994-48607126)
chr1 (1-140)||(9636785-9636924)
chr1 (1-137)||(30559391-30559525)
chr1 (138-257)||(30559087-30559206)
chr1 (138-251)||(9637095-9637208)
chr1 (138-257)||(14498872-14498990)
chr1 (149-257)||(52753899-52754007)
chr1 (150-251)||(48606700-48606801)
chr1 (16-140)||(50682657-50682781)
chr1 (149-257)||(32379937-32380042)
chr1 (164-257)||(17127439-17127532)
chr1 (189-257)||(35949060-35949128)
chr1 (164-257)||(26273011-26273104)
chr1 (1-64)||(52754196-52754257)
chr1 (27-64)||(14498624-14498661)
chr1 (190-257)||(30054847-30054914)
chr1 (164-257)||(21973870-21973963)
chr1 (27-64)||(49465526-49465563)
[»] chr4 (14 HSPs)
chr4 (1-251)||(4325256-4325499)
chr4 (1-133)||(17359120-17359252)
chr4 (138-257)||(31944590-31944709)
chr4 (14-133)||(29528249-29528368)
chr4 (4-123)||(24104821-24104939)
chr4 (164-257)||(12211308-12211401)
chr4 (164-257)||(27364883-27364976)
chr4 (47-140)||(31944329-31944421)
chr4 (164-257)||(53693116-53693209)
chr4 (164-257)||(55464742-55464835)
chr4 (1-61)||(31943895-31943955)
chr4 (164-251)||(42843707-42843794)
chr4 (1-47)||(9579581-9579627)
chr4 (1-47)||(9585276-9585322)
[»] chr8 (20 HSPs)
chr8 (3-127)||(28846272-28846396)
chr8 (138-251)||(13152482-13152595)
chr8 (138-257)||(24333688-24333807)
chr8 (1-127)||(30694237-30694367)
chr8 (149-251)||(27190756-27190858)
chr8 (5-133)||(27190433-27190563)
chr8 (149-251)||(14446818-14446919)
chr8 (149-257)||(28846606-28846711)
chr8 (164-251)||(16532719-16532806)
chr8 (1-133)||(23448907-23449035)
chr8 (47-126)||(14446531-14446610)
chr8 (16-87)||(24332938-24333009)
chr8 (160-250)||(9256385-9256475)
chr8 (164-257)||(21958512-21958605)
chr8 (164-257)||(30791540-30791633)
chr8 (186-257)||(10467786-10467857)
chr8 (27-64)||(13152805-13152842)
chr8 (32-93)||(40146165-40146223)
chr8 (1-57)||(9256122-9256180)
chr8 (206-251)||(10014523-10014568)
[»] chr2 (12 HSPs)
chr2 (3-129)||(34318147-34318273)
chr2 (21-140)||(12539260-12539377)
chr2 (1-140)||(28841077-28841216)
chr2 (149-251)||(34317555-34317657)
chr2 (168-251)||(35649748-35649831)
chr2 (138-257)||(12539548-12539666)
chr2 (164-257)||(19951913-19952006)
chr2 (193-257)||(13308745-13308809)
chr2 (164-257)||(33453270-33453363)
chr2 (183-257)||(22483568-22483642)
chr2 (164-257)||(34526352-34526445)
chr2 (164-251)||(22464670-22464757)
[»] chr5 (15 HSPs)
chr5 (1-140)||(27169167-27169306)
chr5 (138-257)||(3055456-3055575)
chr5 (1-140)||(40813505-40813644)
chr5 (149-257)||(8785767-8785875)
chr5 (168-257)||(1280382-1280471)
chr5 (149-257)||(11852700-11852808)
chr5 (149-251)||(23244658-23244760)
chr5 (189-257)||(203875-203943)
chr5 (149-257)||(27168885-27168985)
chr5 (16-73)||(15731032-15731089)
chr5 (3-54)||(8785433-8785484)
chr5 (164-257)||(26540737-26540830)
chr5 (76-133)||(8785522-8785579)
chr5 (196-251)||(2228947-2229002)
chr5 (183-257)||(22541905-22541979)
[»] chr7 (16 HSPs)
chr7 (1-140)||(25024075-25024214)
chr7 (138-257)||(23179967-23180086)
chr7 (138-257)||(9230375-9230494)
chr7 (16-133)||(5287249-5287366)
chr7 (149-251)||(43727981-43728083)
chr7 (164-257)||(27387388-27387481)
chr7 (1-80)||(28041559-28041638)
chr7 (164-257)||(19399978-19400071)
chr7 (149-257)||(8638599-8638707)
chr7 (164-257)||(26493796-26493889)
chr7 (164-257)||(38575371-38575464)
chr7 (164-257)||(45197644-45197736)
chr7 (149-214)||(23804623-23804688)
chr7 (174-257)||(18375416-18375499)
chr7 (27-64)||(26782386-26782423)
chr7 (69-140)||(23180262-23180331)
[»] chr6 (11 HSPs)
chr6 (1-133)||(8035800-8035932)
chr6 (1-133)||(25340135-25340267)
chr6 (1-102)||(12180922-12181023)
chr6 (138-257)||(12180607-12180726)
chr6 (149-251)||(11970945-11971047)
chr6 (164-257)||(24074412-24074505)
chr6 (149-257)||(25340430-25340538)
chr6 (171-257)||(25599159-25599245)
chr6 (206-251)||(3050905-3050950)
chr6 (27-66)||(25599115-25599154)
chr6 (164-257)||(32442056-32442146)
[»] chr3 (16 HSPs)
chr3 (1-103)||(9741258-9741360)
chr3 (1-140)||(55194713-55194852)
chr3 (3-133)||(51261656-51261786)
chr3 (1-140)||(3857248-3857376)
chr3 (1-137)||(15667676-15667810)
chr3 (149-257)||(15667958-15668066)
chr3 (138-251)||(3856964-3857077)
chr3 (164-257)||(43137127-43137220)
chr3 (1-83)||(22527229-22527311)
chr3 (164-257)||(31989029-31989122)
chr3 (138-257)||(51261953-51262072)
chr3 (164-257)||(37381951-37382044)
chr3 (164-257)||(53710398-53710491)
chr3 (164-257)||(24908475-24908568)
chr3 (32-101)||(24988960-24989026)
chr3 (183-251)||(43585836-43585904)
[»] scaffold0178 (2 HSPs)
scaffold0178 (1-140)||(17407-17543)
scaffold0178 (138-257)||(17714-17833)
[»] scaffold0019 (1 HSPs)
scaffold0019 (164-257)||(134936-135029)
[»] scaffold0002 (1 HSPs)
scaffold0002 (138-251)||(435438-435556)
[»] scaffold0015 (1 HSPs)
scaffold0015 (164-257)||(214243-214336)
[»] scaffold0007 (1 HSPs)
scaffold0007 (164-257)||(259918-260011)
[»] scaffold0726 (1 HSPs)
scaffold0726 (32-101)||(845-911)
[»] scaffold0198 (1 HSPs)
scaffold0198 (197-257)||(1429-1489)
[»] scaffold0168 (1 HSPs)
scaffold0168 (164-257)||(15814-15907)
[»] scaffold0012 (1 HSPs)
scaffold0012 (164-251)||(197105-197192)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 25017223 - 25017479
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaa 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25017223 actcaatactcatagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaa 25017322  T
Q  101 aatgaaataatattaagttacaacttataatcatttcataagctcgtaagaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatg 200  Q
    ||||| ||||||| ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||| |||    
T  25017323 aatgacataatatcaagttacaacttataatcacttcataagctcataagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatg 25017422  T
Q  201 atatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||    
T  25017423 atatcttacaccgagcgagagatattcaaatcacttgatgatgttgatattattcga 25017479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 40865057 - 40864801
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaa 100  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40865057 actcaatactcacataaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagtttattaggcaa 40864958  T
Q  101 aatgaaataatattaagttacaacttataatcatttcataagctcgtaagaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatg 200  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  40864957 aatgaaataatatcaagttacaacttataatcacttcataagctcgtaagaaataattgttaccaacaagatcaacgatgtgtggttcaatgacttgatg 40864858  T
Q  201 atatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||||||||||| |||| ||||||||||||| ||||| ||||||||||| |||||    
T  40864857 atatcttacaccgaacgagggatattcaagtcacttgataatgttgatattattcga 40864801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 48607126 - 48606994
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaa 100  Q
    |||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||    
T  48607126 actcaatactcagagaaatcaaaatctatatatactacattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattggagaa 48607027  T
Q  101 aatgaaataatattaagttacaacttataatca 133  Q
    ||| | ||||||| ||||||||||||| |||||    
T  48607026 aataacataatatcaagttacaacttaaaatca 48606994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 9636785 - 9636924
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaa 100  Q
    |||||||| ||| |||||||||||| |||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||    
T  9636785 actcaataatcacagaaatcaaaatctatatatactgcattgctcatttaatttatagtaataaaatttgaatcactattcataatagcttattagacaa 9636884  T
Q  101 aatgaaataatattaagttacaacttataatcatttcata 140  Q
    ||||| ||||||| ||||||||||||| | ||| ||||||    
T  9636885 aatgacataatatcaagttacaacttacactcacttcata 9636924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 30559525 - 30559391
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaa 100  Q
    |||||||||||| |  |||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||    
T  30559525 actcaatactcacaacaatcaaaat--atatatactccattgctcatttaatttatggtaacaaaattcgaatcactattcataatggcttattagacaa 30559428  T
Q  101 aatgaaataatattaagttacaacttataatcatttc 137  Q
    ||||| ||| ||| ||||||||||||| |||||||||    
T  30559427 aatgacatactatcaagttacaacttacaatcatttc 30559391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 138 - 257
Target Start/End: Complemental strand, 30559206 - 30559087
Alignment:
Q  138 ataagctcgtaagaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttg 237  Q
    |||||||||  ||||| |||||||| |||||||||||||| |||||||||| ||||||| ||||||| |||||||||||||||||||||||||||| |||    
T  30559206 ataagctcgcgagaaagaattgttatcaacaagatcaacgatgtgtggttctatgacttgatgatatgttacaccgagcgagagatattcaagtcacttg 30559107  T
Q  238 atgatgttgatattcttcga 257  Q
    |||||| ||||||| |||||    
T  30559106 atgatgctgatattattcga 30559087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 9637095 - 9637208
Alignment:
Q  138 ataagctcgtaagaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttg 237  Q
    ||||| |||| ||||||||||||||||||||||||||| | || ||||||||||||||| ||||||| |||||||||||| | ||||||||||||| |||    
T  9637095 ataagttcgtgagaaataattgttaccaacaagatcaatgatgcgtggttcaatgacttgatgatatgttacaccgagcgggtgatattcaagtcacttg 9637194  T
Q  238 atgatgttgatatt 251  Q
    ||||||||||||||    
T  9637195 atgatgttgatatt 9637208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 138 - 257
Target Start/End: Original strand, 14498872 - 14498990
Alignment:
Q  138 ataagctcgtaagaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttg 237  Q
    |||||||||| ||||| | |||||||||||| |||||||| | |||||| ||||||||| ||||||||||||| |||||| |||||||||||||||||||    
T  14498872 ataagctcgtgagaaagatttgttaccaacatgatcaacgatttgtggt-caatgacttgatgatatcttacatcgagcgggagatattcaagtcatttg 14498970  T
Q  238 atgatgttgatattcttcga 257  Q
    |||||||||||||| |||||    
T  14498971 atgatgttgatattattcga 14498990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 52754007 - 52753899
Alignment:
Q  149 agaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgat 248  Q
    ||||| |||| ||||||||| |||||||| |||||||||||||||||| ||||||| ||||| ||| || ||||||||||||||||||||||||||||||    
T  52754007 agaaagaattattaccaacatgatcaacgatgtgtggttcaatgacttgatgatatgttacatcgaacgggagatattcaagtcatttgatgatgttgat 52753908  T
Q  249 attcttcga 257  Q
    ||| |||||    
T  52753907 attattcga 52753899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 48606801 - 48606700
Alignment:
Q  150 gaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgata 249  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||| |||||||||||| ||||||||||||| | ||||| |||||||||    
T  48606801 gaaagaattgctaccaacaagatcaacgatgtgtggttcaatgacttgatgatatgttacaccgagcgggagatattcaagtaacttgataatgttgata 48606702  T
Q  250 tt 251  Q
    ||    
T  48606701 tt 48606700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 50682781 - 50682657
Alignment:
Q  16 aaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaaaatgaaataatatta 115  Q
    |||||||||||||| ||||||||||||||  ||||||||| ||||| ||| |||||||||| |||||||||| ||||| || |||||||| ||| ||| |    
T  50682781 aaatcaaaatttatgtatactccattgctattttaatttacggtaataaattttgaatcaccattcataataacttatcagacaaaatgacatactatca 50682682  T
Q  116 agttacaacttataatcatttcata 140  Q
    |||||||||||| ||||| ||||||    
T  50682681 agttacaacttacaatcacttcata 50682657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 32380042 - 32379937
Alignment:
Q  149 agaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgat 248  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||   |||||| ||||||| | || ||||||||||| ||| ||||||||||||||    
T  32380042 agaaagaattgttaccaacaagatcaacgatgtgtggttcaatgact---tgatatgttacaccaaacgggagatattcaattcacttgatgatgttgat 32379946  T
Q  249 attcttcga 257  Q
    ||| |||||    
T  32379945 attattcga 32379937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 17127439 - 17127532
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||||||||||  ||||||||| |||||||| ||||||| |||||||||||| ||||||||||||||  ||||||||||||||||| |||||    
T  17127439 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcgcttgatgatgttgatattattcga 17127532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 35949128 - 35949060
Alignment:
Q  189 aatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||| |||||||||||||| || |||||    
T  35949128 aatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatgttattcga 35949060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 26273104 - 26273011
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||| ||||||| ||||| ||||||||| || ||||||| ||||| |||||  |||||||||||||||  |||||||||| ||||| |||||    
T  26273104 caacaaaatcaacgatgtgttgttcaatgatttgatgatatgttacatcgagcaggagatattcaagtcacgtgatgatgttaatattattcga 26273011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 52754257 - 52754196
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaa 64  Q
    |||||||||||| | ||||||| ||  |||||||||||||||||||||||||||||||||||||    
T  52754257 actcaatactcacataaatcaatat--atatatactccattgctcatttaatttatggtaacaa 52754196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 14498624 - 14498661
Alignment:
Q  27 tatatatactccattgctcatttaatttatggtaacaa 64  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14498624 tatatatactccattgctcatttaatttatggtaacaa 14498661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 257
Target Start/End: Original strand, 30054847 - 30054914
Alignment:
Q  190 atgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||| ||||| || |||| ||| |||||    
T  30054847 atgacttaatgatatgttacaccgagcgggagatattcaagtcacttgatcatattgacattattcga 30054914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 21973963 - 21973870
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    ||||||||| |||  || |||||| ||||| || ||||||| |||||| ||||| ||||||||||| ||| |||||||  |||||||| |||||    
T  21973963 caacaagattaacaatgagtggttaaatgatttgatgatatgttacactgagcgggagatattcaaatcacttgatgacattgatattattcga 21973870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 49465563 - 49465526
Alignment:
Q  27 tatatatactccattgctcatttaatttatggtaacaa 64  Q
    |||||||||| |||||||||||||||||||||||||||    
T  49465563 tatatatacttcattgctcatttaatttatggtaacaa 49465526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 4325256 - 4325499
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaa 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||     ||||||||||||| |||    
T  4325256 actcaatactcacagaaatcaaaatttatatatactccattgctc-tttaatttatggtaaccaaatttgaatcacta-----aatagcttattagacaa 4325349  T
Q  101 aatgaaataatattaagttacaacttataatcatttcataagctcgtaagaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatg 200  Q
    ||||| |||||||||||||||||||||  |||| ||||||||| ||||||||| ||| ||||||||||||||||||| |||||||||||||||||| |||    
T  4325350 aatgacataatattaagttacaacttacgatcacttcataagcccgtaagaaagaat-gttaccaacaagatcaacgatgtgtggttcaatgacttgatg 4325448  T
Q  201 atatcttacaccgagcgagagatattcaagtcatttgatgatgttgatatt 251  Q
    |||| |||||||||| | |||||| ||||  || |||||||||||||||||    
T  4325449 atatgttacaccgagtgggagataatcaacccacttgatgatgttgatatt 4325499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 17359120 - 17359252
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaa 100  Q
    |||||||||||| | ||||  |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||    
T  17359120 actcaatactcacataaattgaaatttatatatactccattgctcatttaagttatggtaataaaatttgaatcactattcataatagcttattagacaa 17359219  T
Q  101 aatgaaataatattaagttacaacttataatca 133  Q
    ||||| ||||||| |||||||| |||| |||||    
T  17359220 aatgacataatatcaagttacagcttacaatca 17359252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 138 - 257
Target Start/End: Original strand, 31944590 - 31944709
Alignment:
Q  138 ataagctcgtaagaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttg 237  Q
    |||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||| | ||||||||||||||| |||    
T  31944590 ataagctcgtgagaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgatatgttacaccgagtgtgagatattcaagtcacttg 31944689  T
Q  238 atgatgttgatattcttcga 257  Q
    |||||||||||||| |||||    
T  31944690 atgatgttgatattattcga 31944709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 29528368 - 29528249
Alignment:
Q  14 agaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaaaatgaaataatat 113  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| |||||||| ||| |||    
T  29528368 agaaatcaaaatctatatatacttcattgctcatttaatttatggtaacaaaatttgaatcactattcataatgatttattagacaaaatgacatactat 29528269  T
Q  114 taagttacaacttataatca 133  Q
     ||||||||||||| |||||    
T  29528268 caagttacaacttacaatca 29528249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 24104939 - 24104821
Alignment:
Q  4 caatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaaaat 103  Q
    ||||||||| | |||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  24104939 caatactcacaaaaattaaaatttatgtatacttcattgctcatttaatttatggtaacaaaatttgaatcactattcatattagcttattagacaaaat 24104840  T
Q  104 gaaataatattaagttacaa 123  Q
    || | ||||| |||||||||    
T  24104839 gaca-aatatcaagttacaa 24104821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 12211401 - 12211308
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||||||||||| |||||||||||||||||| ||||||| ||||||||| |  ||||||||||||||||||||||||||||||||| |||||    
T  12211401 caacaagatcaacgatgtgtggttcaatgacttgatgatatgttacaccgaacaggagatattcaagtcatttgatgatgttgatattattcga 12211308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 27364883 - 27364976
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||||||||||  ||||||||| |||||||| ||||||| |||||||||||| ||||||||||||||| ||||||||||||||||| |||||    
T  27364883 caacaagatcaacagtgtgtggttaaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcga 27364976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 140
Target Start/End: Original strand, 31944329 - 31944421
Alignment:
Q  47 tttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaaaatgaaataatattaagttacaacttataatcatttcata 140  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| | ||||| ||||||||||||| ||||| ||||||    
T  31944329 tttaatttatggtaacagaatttgaatcactattcataatagcttattagac-aaatgacagaatatcaagttacaacttacaatcacttcata 31944421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 53693209 - 53693116
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    ||||| |||||||| |||||||||||||||||| ||||||| ||||| |||||| |||||| ||||| || ||||||||||||||||| |||||    
T  53693209 caacatgatcaacggtgtgtggttcaatgacttgatgatatgttacatcgagcgggagataatcaaggcacttgatgatgttgatattattcga 53693116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 55464835 - 55464742
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||||||||||  ||||||||| |||||||| ||||||| |||||||||||| |||| | |||||||| ||||||||||||||||| |||||    
T  55464835 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagaaaatcaagtcacttgatgatgttgatattattcga 55464742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 31943895 - 31943955
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaa 61  Q
    |||||||||||| | |||||||||| ||||||||||||||||||||||||||||| |||||    
T  31943895 actcaatactcacataaatcaaaatctatatatactccattgctcatttaatttagggtaa 31943955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 42843707 - 42843794
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatatt 251  Q
    |||||||||||||  ||||||||| ||||| || ||||||| ||| |  ||| ||||||||||||||||| |||||||||||||||||    
T  42843707 caacaagatcaacaatgtgtggtttaatgagttgatgatatgttatattgagtgagagatattcaagtcacttgatgatgttgatatt 42843794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9579581 - 9579627
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcat 47  Q
    |||||||||| | | |||||||||| |||||||||||||||||||||    
T  9579581 actcaatacttacataaatcaaaatctatatatactccattgctcat 9579627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9585276 - 9585322
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcat 47  Q
    |||||||||| | | |||||||||| |||||||||||||||||||||    
T  9585276 actcaatacttacataaatcaaaatctatatatactccattgctcat 9585322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 28846272 - 28846396
Alignment:
Q  3 tcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaaaa 102  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28846272 tcaatactcacagaaatcaaaatctatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattagacaaaa 28846371  T
Q  103 tgaaataatattaagttacaactta 127  Q
    ||| ||| ||| |||||||||||||    
T  28846372 tgacatactatcaagttacaactta 28846396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 13152595 - 13152482
Alignment:
Q  138 ataagctcgtaagaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttg 237  Q
    |||||| ||| ||||| |||||||||||||| |||||||| |||||||||||||||||| ||||||| ||||| |||||| |||||||||||||||||||    
T  13152595 ataagcccgtgagaaagaattgttaccaacatgatcaacgctgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcatttg 13152496  T
Q  238 atgatgttgatatt 251  Q
    ||||||||| ||||    
T  13152495 atgatgttggtatt 13152482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 138 - 257
Target Start/End: Original strand, 24333688 - 24333807
Alignment:
Q  138 ataagctcgtaagaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttg 237  Q
    |||||| ||| ||||| ||||||||||||||||||||||| ||| || ||||||||||||||||||| |||||| ||||| ||||||||||||||| |||    
T  24333688 ataagcccgtgagaaagaattgttaccaacaagatcaacgatgtatgattcaatgactttatgatatgttacactgagcgggagatattcaagtcacttg 24333787  T
Q  238 atgatgttgatattcttcga 257  Q
    |||||||| ||||| |||||    
T  24333788 atgatgttaatattattcga 24333807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 30694237 - 30694367
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactcc----attgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattag 96  Q
    |||||||||||| | |||||||||| ||||||||||      ||||||||| || ||||||||||||||||||||||||| ||||||||||||||| |||    
T  30694237 actcaatactcacataaatcaaaatctatatatacttacttaattgctcatgtagtttatggtaacaaaatttgaatcaccattcataatagcttaatag 30694336  T
Q  97 gcaaaatgaaataatattaagttacaactta 127  Q
     |||||||| |||||||||||||||||||||    
T  30694337 acaaaatgacataatattaagttacaactta 30694367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 27190756 - 27190858
Alignment:
Q  149 agaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgat 248  Q
    ||||| ||||||||| ||||||||||||| |||||||||||||||||| ||||||| || |||| |||| ||||||||||||||| ||||||||||||||    
T  27190756 agaaagaattgttacaaacaagatcaacgatgtgtggttcaatgacttgatgatatgttgcacctagcgggagatattcaagtcacttgatgatgttgat 27190855  T
Q  249 att 251  Q
    |||    
T  27190856 att 27190858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 27190433 - 27190563
Alignment:
Q  5 aatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaat--cactattcataatagcttattaggcaaaa 102  Q
    |||||||| | |||||||||| |||||||||  |||||||||||||||||| |||||||||||||||||  ||||||||||||||| ||||  | |||||    
T  27190433 aatactcacataaatcaaaatctatatatacatcattgctcatttaatttacggtaacaaaatttgaatcacactattcataatagtttatcggacaaaa 27190532  T
Q  103 tgaaataatattaagttacaacttataatca 133  Q
    ||| ||| ||| ||||||||||||| |||||    
T  27190533 tgacatactatcaagttacaacttacaatca 27190563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 14446818 - 14446919
Alignment:
Q  149 agaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgat 248  Q
    ||||| ||||||||||| ||||||||||| | |||||||||||||||| ||||||| ||||||| || ||||||||||||||||| ||||||||||||||    
T  14446818 agaaagaattgttacca-caagatcaacgatttgtggttcaatgacttgatgatatgttacaccaagagagagatattcaagtcacttgatgatgttgat 14446916  T
Q  249 att 251  Q
    |||    
T  14446917 att 14446919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 28846606 - 28846711
Alignment:
Q  149 agaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgat 248  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||| |||||    |||| |||||| ||||||||||||||| ||||||||||||||    
T  28846606 agaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgatgat---gtacatcgagcgggagatattcaagtcacttgatgatgttgat 28846702  T
Q  249 attcttcga 257  Q
    ||| |||||    
T  28846703 attattcga 28846711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 16532806 - 16532719
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatatt 251  Q
    |||||||||||||| |||||||||||||||||| ||||||| ||| ||| || ||||||||||||||||| |||||||||||||||||    
T  16532806 caacaagatcaacgatgtgtggttcaatgacttgatgatatgttataccaagtgagagatattcaagtcacttgatgatgttgatatt 16532719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 23448907 - 23449035
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaa 100  Q
    ||||||| |||| |||||||||||| ||||||||||| | ||||||||||||| |||||||||||||| ||||     |||||||||||||||||| |||    
T  23448907 actcaatgctcacagaaatcaaaatctatatatactctaatgctcatttaattcatggtaacaaaattagaatt----ttcataatagcttattagacaa 23449002  T
Q  101 aatgaaataatattaagttacaacttataatca 133  Q
    ||||| ||| ||| ||||||||| ||| |||||    
T  23449003 aatgacatagtatcaagttacaaattacaatca 23449035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 47 - 126
Target Start/End: Original strand, 14446531 - 14446610
Alignment:
Q  47 tttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaaaatgaaataatattaagttacaactt 126  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||| |||||| | ||| ||| ||||||||||||    
T  14446531 tttaatttatggcaacaaaatttgaatcactattcataataacttattagacaaaataacatactataaagttacaactt 14446610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 24332938 - 24333009
Alignment:
Q  16 aaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataata 87  Q
    |||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||| |||| ||||||    
T  24332938 aaatcaaaatctatatatactacgttgctcatttaatttatggtaacaaaatttgaatcattatttataata 24333009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 9256385 - 9256475
Alignment:
Q  160 ttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatat 250  Q
    ||||||| | |||||| | ||||||||| |||||||| ||||||| ||||| |||||| ||||||||||||||| ||||||||||||||||    
T  9256385 ttaccaatatgatcaatgatgtgtggtttaatgacttgatgatatgttacatcgagcgggagatattcaagtcacttgatgatgttgatat 9256475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 21958512 - 21958605
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||||||||||  | ||||||| |||||||| ||||||| |||||||||||  ||||||||| ||||| ||||||||||||||||| |||||    
T  21958512 caacaagatcaacaatatgtggttgaatgacttgatgatatgttacaccgagcaggagatattcgagtcacttgatgatgttgatattattcga 21958605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 30791633 - 30791540
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    ||||||||||||   || ||||||||||||||| ||||||| |||||||||||| ||||||||||||||| |||||||  |||||||| |||||    
T  30791633 caacaagatcaagaatgagtggttcaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgacattgatattattcga 30791540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 257
Target Start/End: Original strand, 10467786 - 10467857
Alignment:
Q  186 ttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    ||||||||||| ||||||| ||||| |||||| |||||| |||||||||||||||||||||||||| |||||    
T  10467786 ttcaatgacttgatgatatgttacatcgagcgggagataatcaagtcatttgatgatgttgatattattcga 10467857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 13152842 - 13152805
Alignment:
Q  27 tatatatactccattgctcatttaatttatggtaacaa 64  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13152842 tatatatactccattgctcatttaatttatggtaacaa 13152805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 40146223 - 40146165
Alignment:
Q  32 atactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttat 93  Q
    ||||| ||||||| ||||| |||||||||||||   ||||||||||||||||||||||||||    
T  40146223 atacttcattgctaatttattttatggtaacaa---ttgaatcactattcataatagcttat 40146165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 9256122 - 9256180
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttata--tatactccattgctcatttaatttatg 57  Q
    |||||||||||| |  ||||||||| ||||  |||||||||||||||||||||||||||    
T  9256122 actcaatactcacatcaatcaaaatctatatatatactccattgctcatttaatttatg 9256180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 10014568 - 10014523
Alignment:
Q  206 ttacaccgagcgagagatattcaagtcatttgatgatgttgatatt 251  Q
    ||||||||||||  ||||||||| |||| |||||||||||||||||    
T  10014568 ttacaccgagcggaagatattcatgtcacttgatgatgttgatatt 10014523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 129
Target Start/End: Complemental strand, 34318273 - 34318147
Alignment:
Q  3 tcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaaaa 102  Q
    |||||| ||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  34318273 tcaatattcaaaaaaattaaaatttatatatagtccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttactagacaaaa 34318174  T
Q  103 tgaaataatattaagttacaacttata 129  Q
    ||| ||||||| |||||||||||||||    
T  34318173 tgacataatatcaagttacaacttata 34318147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 12539260 - 12539377
Alignment:
Q  21 aaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaaaatgaaataatattaagtta 120  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  12539260 aaaatttatatatactccatt--tcatttaatttatggtaacaaaatttgaatcactattcataatagcttattagacaaaatgacataatatcaagtta 12539357  T
Q  121 caacttataatcatttcata 140  Q
    ||||||| ||||| ||||||    
T  12539358 caacttacaatcacttcata 12539377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 28841077 - 28841216
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaa 100  Q
    |||||||||||| | |||||||||| |||| |||||||| | ||||||||||||||||||| || |||||| |||||| ||||||||||||||||| |||    
T  28841077 actcaatactcacataaatcaaaatctatacatactccactactcatttaatttatggtaataagatttgattcactagtcataatagcttattagacaa 28841176  T
Q  101 aatgaaataatattaagttacaacttataatcatttcata 140  Q
    ||||| ||| ||| ||||||||||||| ||||| ||||||    
T  28841177 aatgacatactatcaagttacaacttacaatcacttcata 28841216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 149 - 251
Target Start/End: Complemental strand, 34317657 - 34317555
Alignment:
Q  149 agaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgat 248  Q
    ||||| ||||||||||||||||||||| | |||||||||||||||||| ||||||| ||||||||||  |||||||||||||||| || |||||||||||    
T  34317657 agaaagaattgttaccaacaagatcaatgatgtgtggttcaatgacttgatgatatgttacaccgagtaagagatattcaagtcacttcatgatgttgat 34317558  T
Q  249 att 251  Q
    |||    
T  34317557 att 34317555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 168 - 251
Target Start/End: Complemental strand, 35649831 - 35649748
Alignment:
Q  168 aagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatatt 251  Q
    |||||||||| ||||| |||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  35649831 aagatcaacgatgtgttgttcaatgacttgatgatatgttacaccgagcgggagatattcaagtcatttgatgatgttgatatt 35649748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 257
Target Start/End: Original strand, 12539548 - 12539666
Alignment:
Q  138 ataagctcgtaagaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttg 237  Q
    |||||| ||| ||||| ||||||||||||||||||||||  || ||||||||||||||| ||||||| ||| |||||||   |||||||||||||| |||    
T  12539548 ataagcccgtgagaaagaattgttaccaacaagatcaacaatgcgtggttcaatgacttgatgatatgtta-accgagcataagatattcaagtcacttg 12539646  T
Q  238 atgatgttgatattcttcga 257  Q
    |||||||||||||| |||||    
T  12539647 atgatgttgatattattcga 12539666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 19952006 - 19951913
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    ||||||||| |||| ||| |||||||||||||| | ||||| | |||| ||||||||||||||||||||| ||||||||||||||||| |||||    
T  19952006 caacaagattaacgatgtatggttcaatgacttgacgatatgtcacactgagcgagagatattcaagtcacttgatgatgttgatattattcga 19951913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 13308745 - 13308809
Alignment:
Q  193 actttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  13308745 acttgatgatatgttacaccgagcgagagatattcaagtcacttgatgatgttgatattattcga 13308809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 33453363 - 33453270
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatctt-acaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||||||||||| |||||||| ||||||||| || |||| || |||||||||| |||||||| |||||| ||||||||||||||||| |||||    
T  33453363 caacaagatcaacgatgtgtggt-caatgacttcatcatatgtttacaccgagcgggagatatttaagtcacttgatgatgttgatattattcga 33453270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 22483568 - 22483642
Alignment:
Q  183 tggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    ||||| |||||||| ||||||| |||||||||||| ||||||||||| ||| |||||||  |||||||| |||||    
T  22483568 tggttaaatgacttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcga 22483642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 34526352 - 34526445
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    ||||||||| |||  || |||||| ||||| || ||||||| |||||||||||| ||||||||||| ||| |||||||  |||||||| |||||    
T  34526352 caacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcga 34526445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 22464670 - 22464757
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatatt 251  Q
    ||||||||| |||  || |||||| ||||| || ||||||| |||||||||||| ||||||||||| ||| |||||||  ||||||||    
T  22464670 caacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatatt 22464757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 9e-45; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 27169306 - 27169167
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaa 100  Q
    |||||||||||| | ||||||||||  |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27169306 actcaatactcacataaatcaaaatcaatatatactatgttgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattagacaa 27169207  T
Q  101 aatgaaataatattaagttacaacttataatcatttcata 140  Q
    ||||| ||||||| ||||||||||||| ||||| ||||||    
T  27169206 aatgacataatatcaagttacaacttacaatcacttcata 27169167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 138 - 257
Target Start/End: Original strand, 3055456 - 3055575
Alignment:
Q  138 ataagctcgtaagaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttg 237  Q
    |||||| ||| ||||| |||||||||||||| |||||||| |||||||||||||||||| ||||||| ||||| |||||| |||||||||||||||||||    
T  3055456 ataagcccgtgagaaagaattgttaccaacatgatcaacgatgtgtggttcaatgacttgatgatatgttacatcgagcgggagatattcaagtcatttg 3055555  T
Q  238 atgatgttgatattcttcga 257  Q
    |||||||||||||| |||||    
T  3055556 atgatgttgatattattcga 3055575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 40813505 - 40813644
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaa 100  Q
    |||||||||||  | ||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||| || |||    
T  40813505 actcaatactcgcataaatcaaaatttacatatactccattactcatttaatttatggtaataaaatttgaatcactattcataatagtttatcagacaa 40813604  T
Q  101 aatgaaataatattaagttacaacttataatcatttcata 140  Q
    ||||| ||||||| | ||||||||||  ||||| ||||||    
T  40813605 aatgacataatatcaggttacaacttgcaatcacttcata 40813644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 8785767 - 8785875
Alignment:
Q  149 agaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgat 248  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||| || |||| ||||| | |||| ||||||||||| ||| |||||||| |||||    
T  8785767 agaaagaattgttaccaacaagatcaacgatgtgtggttcaatgacttgataatatattacatcaagcgggagatattcaattcagttgatgatattgat 8785866  T
Q  249 attcttcga 257  Q
    ||| |||||    
T  8785867 attattcga 8785875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 1280382 - 1280471
Alignment:
Q  168 aagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||||||  ||||||||||||||| || ||||||| |||||||||||| ||||||||||||||| ||||||||||||||||| |||||    
T  1280382 aagatcaacaatgtgtggttcaatgatttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcga 1280471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 11852700 - 11852808
Alignment:
Q  149 agaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgat 248  Q
    ||||| |||| ||||||||||||| || | |||||||||||||||||| ||||||| ||||||||| || |||||||| || ||| ||||||||||||||    
T  11852700 agaaagaattattaccaacaagatgaaagatgtgtggttcaatgacttgatgatatgttacaccgaacgggagatatttaactcacttgatgatgttgat 11852799  T
Q  249 attcttcga 257  Q
    ||| |||||    
T  11852800 attattcga 11852808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 149 - 251
Target Start/End: Complemental strand, 23244760 - 23244658
Alignment:
Q  149 agaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgat 248  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||| ||||||| |||   ||||||  || ||||| ||||| ||||||||||||||    
T  23244760 agaaagaattgttaccaacaagatcaacgatgtgtcgttcaatgacttgatgatatgttatgtcgagcggaagttattctagtcacttgatgatgttgat 23244661  T
Q  249 att 251  Q
    |||    
T  23244660 att 23244658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 203875 - 203943
Alignment:
Q  189 aatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||| ||||||||||||||||| |||||    
T  203875 aatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcga 203943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 27168985 - 27168885
Alignment:
Q  149 agaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgat 248  Q
    ||||||||||||||| ||||||||||||| ||||||||||||| |        ||| |||||||||||| ||||||||||||||| ||||| ||||||||    
T  27168985 agaaataattgttacaaacaagatcaacgatgtgtggttcaataa--------tatgttacaccgagcgggagatattcaagtcacttgataatgttgat 27168894  T
Q  249 attcttcga 257  Q
    ||| |||||    
T  27168893 attattcga 27168885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 15731089 - 15731032
Alignment:
Q  16 aaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaat 73  Q
    |||||||||| |||||||||| ||||||||||||| |||||||||| |||||||||||    
T  15731089 aaatcaaaatctatatatacttcattgctcatttactttatggtaataaaatttgaat 15731032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 8785433 - 8785484
Alignment:
Q  3 tcaatactcaaagaaatcaaaatttatatatactccattgctcatttaattt 54  Q
    |||||||||| |||||||||||| |||||||||| |||||||||||||||||    
T  8785433 tcaatactcacagaaatcaaaatctatatatacttcattgctcatttaattt 8785484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 26540830 - 26540737
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    ||||||||| |||  || |||||| ||||| || ||||||| |||||||||||| ||||||||||| ||| |||||||  |||||||| |||||    
T  26540830 caacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcga 26540737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 8785522 - 8785579
Alignment:
Q  76 ctattcataatagcttattaggcaaaatgaaataatattaagttacaacttataatca 133  Q
    ||||||||||||||||||||| |||||||| ||||||| || ||||| |||| |||||    
T  8785522 ctattcataatagcttattagacaaaatgacataatatcaaattacaccttacaatca 8785579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 251
Target Start/End: Original strand, 2228947 - 2229002
Alignment:
Q  196 ttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatatt 251  Q
    ||||||||  |||||| |||||  ||||||| ||||||||||||||||||||||||    
T  2228947 ttatgatacattacactgagcggaagatatttaagtcatttgatgatgttgatatt 2229002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 22541905 - 22541979
Alignment:
Q  183 tggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    ||||| |||||||| ||||||| ||||| ||| ||  |||||||||||||| | ||||||||| ||||| |||||    
T  22541905 tggttgaatgacttgatgatatgttacatcgaacggaagatattcaagtcactcgatgatgttaatattattcga 22541979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 25024075 - 25024214
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaa 100  Q
    |||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| || |||    
T  25024075 actcaatactcacataaatcaaaatctatatatactccattgctcatttaatttatggtaacaaaatttgatttactattcataatagcttatcagacaa 25024174  T
Q  101 aatgaaataatattaagttacaacttataatcatttcata 140  Q
    ||||| ||| ||| ||||||||| ||| ||||| ||||||    
T  25024175 aatgacatactatcaagttacaaattacaatcacttcata 25024214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 138 - 257
Target Start/End: Complemental strand, 23180086 - 23179967
Alignment:
Q  138 ataagctcgtaagaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttg 237  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||| |||||| |||| ||||||| ||||||||||||||||||||||||| || |||    
T  23180086 ataagctcgtgagaaataattgttaccaacaagatcaacgatgtgtgtttcaataacttgatgatatgttacaccgagcgagagatattcaaggcacttg 23179987  T
Q  238 atgatgttgatattcttcga 257  Q
    || ||||||||||| |||||    
T  23179986 ataatgttgatattattcga 23179967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 138 - 257
Target Start/End: Original strand, 9230375 - 9230494
Alignment:
Q  138 ataagctcgtaagaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttg 237  Q
    |||||| ||| ||||| |||||||||||||| | |||||| |||||||||||||||||| ||||||| |||||  ||||| |||||| ||||||||||||    
T  9230375 ataagcccgttagaaaaaattgttaccaacatggtcaacgatgtgtggttcaatgacttgatgatatgttacatagagcgggagatactcaagtcatttg 9230474  T
Q  238 atgatgttgatattcttcga 257  Q
    |||||||||||||| |||||    
T  9230475 atgatgttgatattattcga 9230494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 5287249 - 5287366
Alignment:
Q  16 aaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaaaatgaaataatatta 115  Q
    |||||||||| || |||| ||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||  | |||||||| ||| ||| |    
T  5287249 aaatcaaaatctacatattctccattgctcatttaatttatggtgacaaaatttgaatcagtgttcataatagcttatcggacaaaatgacatactatca 5287348  T
Q  116 agttacaacttataatca 133  Q
    |||||||||||| |||||    
T  5287349 agttacaacttacaatca 5287366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 43727981 - 43728083
Alignment:
Q  149 agaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgat 248  Q
    ||||| |||||||||||||| |||||||| |||||||||||||||||| ||||||| ||| | ||| || ||||||||||||||| ||||||||||||||    
T  43727981 agaaagaattgttaccaacatgatcaacgatgtgtggttcaatgacttgatgatatgttatatcgaacgggagatattcaagtcagttgatgatgttgat 43728080  T
Q  249 att 251  Q
    |||    
T  43728081 att 43728083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 27387481 - 27387388
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||||||||||  ||||||||| |||||||| ||||||| |||||||||||| ||||||||||||||| ||||||||||||||||| |||||    
T  27387481 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcga 27387388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 28041638 - 28041559
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactatt 80  Q
    |||||||||||| | |||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  28041638 actcaatactcacataaatcaaaatgtatatatacttcattgctcatttaatttatggtaacataatttgaatcactatt 28041559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 19399978 - 19400071
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||||||||||  ||||||||| |||||||| ||||||| |||||||||||| ||||||||||||||  ||||||||||||||||| |||||    
T  19399978 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcgcttgatgatgttgatattattcga 19400071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 8638599 - 8638707
Alignment:
Q  149 agaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgat 248  Q
    ||||| |||||||||||||||||||||||  |||||||| ||| |||| ||||||| ||| ||||| | ||||||||||||||||||||||||| | |||    
T  8638599 agaaagaattgttaccaacaagatcaacgacgtgtggtttaattacttgatgatatgttataccgaacaagagatattcaagtcatttgatgatatcgat 8638698  T
Q  249 attcttcga 257  Q
    ||| |||||    
T  8638699 attattcga 8638707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 26493889 - 26493796
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    ||||||||| |||  ||||||||| |||||||| ||||||  |||||||||||| ||||||||||||||| ||||||||||||||||| |||||    
T  26493889 caacaagatgaacaatgtgtggttaaatgacttgatgatacgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcga 26493796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 38575464 - 38575371
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||| ||||||  || |||||| || ||||| ||||||| |||||||||||| |||||||| |||||| ||||||||||||||||| |||||    
T  38575464 caacaatatcaacaatgggtggttgaacgacttgatgatatgttacaccgagcgggagatattaaagtcacttgatgatgttgatattattcga 38575371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 45197644 - 45197736
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||||||||||  |||||||||||||||||| ||||||| || || |||||  ||||||||||||||| |||| |||||||||||| |||||    
T  45197644 caacaagatcaacaatgtgtggttcaatgacttgatgatatatt-catcgagcaggagatattcaagtcacttgacgatgttgatattgttcga 45197736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 214
Target Start/End: Complemental strand, 23804688 - 23804623
Alignment:
Q  149 agaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccga 214  Q
    ||||| ||| ||||||||||||||||||| ||||||||||||||||||  |||||| |||||||||    
T  23804688 agaaagaatggttaccaacaagatcaacgatgtgtggttcaatgacttgttgatatattacaccga 23804623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 257
Target Start/End: Original strand, 18375416 - 18375499
Alignment:
Q  174 aacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||| |||||||||||||||||| ||||||| |||||  ||||| ||||||||||| ||| | ||| ||||||||||| |||||    
T  18375416 aacgatgtgtggttcaatgacttgatgatatattacatggagcgggagatattcaaatcactagataatgttgatattattcga 18375499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 26782423 - 26782386
Alignment:
Q  27 tatatatactccattgctcatttaatttatggtaacaa 64  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26782423 tatatatactccattgctcatttaatttatggtaacaa 26782386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 23180331 - 23180262
Alignment:
Q  69 tgaatcactattcataatagcttattaggcaaaatgaaataatattaagttacaacttataatcatttcata 140  Q
    |||||||||||||||||||||||||||   ||||||| |||  || ||||||||||||| ||||| ||||||    
T  23180331 tgaatcactattcataatagcttattaaataaaatgacata--atcaagttacaacttacaatcacttcata 23180262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 8035932 - 8035800
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaa 100  Q
    |||||||||||| | || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| || |||    
T  8035932 actcaatactcataaaattcaaaatctatatatactccattgctcatttaatttatggtaacaaaatttgaatcacgattcctaatagcttatcagacaa 8035833  T
Q  101 aatgaaataatattaagttacaacttataatca 133  Q
    ||||| ||| ||| |||||| |||||| |||||    
T  8035832 aatgacatactatcaagttataacttacaatca 8035800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 25340135 - 25340267
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaa 100  Q
    |||||||||||| |||||||||||| |||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  25340135 actcaatactcacagaaatcaaaatctatagatactctattgctcattttatttatggtaacaaaatttgaatcactattcataatagtttattagacaa 25340234  T
Q  101 aatgaaataatattaagttacaacttataatca 133  Q
    ||||| ||| ||| || |||||| ||| |||||    
T  25340235 aatgacatactatcaaattacaatttacaatca 25340267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 12181023 - 12180922
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaa 100  Q
    |||||||||||  | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  12181023 actcaatactcgcataaatcaaaatttacatatactccattgctcatttaatttatggtaacaaaatttgaatcactatttataatagcttattagacaa 12180924  T
Q  101 aa 102  Q
    ||    
T  12180923 aa 12180922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 138 - 257
Target Start/End: Complemental strand, 12180726 - 12180607
Alignment:
Q  138 ataagctcgtaagaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttg 237  Q
    |||||| ||| ||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||| | |||| |||||||||| |||    
T  12180726 ataagcccgtgagaaaaaattgttaccaacaagatcaacattgtgtggttcaatgacttgatgatatgttacaccgagtgggagaaattcaagtcacttg 12180627  T
Q  238 atgatgttgatattcttcga 257  Q
    ||| |||||||||| |||||    
T  12180626 atgttgttgatattattcga 12180607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 149 - 251
Target Start/End: Original strand, 11970945 - 11971047
Alignment:
Q  149 agaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgat 248  Q
    ||||| |||||||||||| |||||||||| |||||||||||||||||| || |||| ||||||||||||  |||||||||||||| ||||||||||||||    
T  11970945 agaaagaattgttaccaataagatcaacgatgtgtggttcaatgacttgatcatatgttacaccgagcggaagatattcaagtcacttgatgatgttgat 11971044  T
Q  249 att 251  Q
    |||    
T  11971045 att 11971047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 24074412 - 24074505
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||||||||||  ||||||||  |||||||| ||||||| |||||||||| | ||||||||||||| | ||||||||||||||||| |||||    
T  24074412 caacaagatcaacaatgtgtggtaaaatgacttgatgatatgttacaccgagggggagatattcaagttacttgatgatgttgatattattcga 24074505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 25340430 - 25340538
Alignment:
Q  149 agaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgat 248  Q
    |||||||| || ||||||||||||||| | |||||| || | ||| || ||||||| ||||||| || |  ||||||| |||||| ||||||||||||||    
T  25340430 agaaataagtgctaccaacaagatcaatgatgtgtgattaagtgatttgatgatatgttacacccagtggaagatatttaagtcacttgatgatgttgat 25340529  T
Q  249 attcttcga 257  Q
    ||| |||||    
T  25340530 attattcga 25340538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 257
Target Start/End: Original strand, 25599159 - 25599245
Alignment:
Q  171 atcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||||  ||| ||||||||||||| ||| ||| ||||| |||| | |||||| |||||||| ||||||||||||||||| |||||    
T  25599159 atcaacgacgtgcggttcaatgacttgatggtatgttacatcgagtgggagataatcaagtcacttgatgatgttgatattattcga 25599245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 3050905 - 3050950
Alignment:
Q  206 ttacaccgagcgagagatattcaagtcatttgatgatgttgatatt 251  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||    
T  3050905 ttacaccgagcgggagatattcaagtcacttgatgatgttgatatt 3050950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 25599115 - 25599154
Alignment:
Q  27 tatatatactccattgctcatttaatttatggtaacaaaa 66  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  25599115 tatatatactccattgctcatttaatttatggtgacaaaa 25599154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 32442146 - 32442056
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    ||||| ||| |||| |||||||||||||||| ||||||||| ||||| ||||||  ||||| |  | ||| ||||||||||||||||| |||||    
T  32442146 caacatgattaacgatgtgtggttcaatgac-ttatgatatgttacatcgagcggaagataat--aatcacttgatgatgttgatattattcga 32442056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 9741258 - 9741360
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaa 100  Q
    |||||||||||| | |||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  9741258 actcaatactcacaaaaatcaaaatttatatatactccattgctctttcaatttatggtaaccaaatttgaatcactattcataatagcttattagacaa 9741357  T
Q  101 aat 103  Q
    |||    
T  9741358 aat 9741360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 55194713 - 55194852
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaa 100  Q
    ||||||||| || | |||||||||| |||||||||| ||||||| |||||||| | ||||||||||||||||||||| |||||||||||||||| | |||    
T  55194713 actcaatacccacataaatcaaaatctatatatacttcattgcttatttaattcacggtaacaaaatttgaatcactgttcataatagcttattggacaa 55194812  T
Q  101 aatgaaataatattaagttacaacttataatcatttcata 140  Q
    ||| | ||||||| ||||||||||||| ||||| ||||||    
T  55194813 aattacataatatcaagttacaacttacaatcagttcata 55194852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 133
Target Start/End: Original strand, 51261656 - 51261786
Alignment:
Q  3 tcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaaaa 102  Q
    ||||||||||  ||||||||||| |||||||||||| ||||  |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  51261656 tcaatactcactgaaatcaaaatctatatatactccgttgcatatttaatttatggtaacaaaatttgaatcactgttcataatagcttattagacaaaa 51261755  T
Q  103 tgaaataatattaagttacaacttataatca 133  Q
    | | ||| ||| ||| ||||||||| |||||    
T  51261756 ttacatactatcaagatacaacttacaatca 51261786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 3857376 - 3857248
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaa 100  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||| |||    
T  3857376 actcaatactcatagaaatcaaaatctatatatactccattgctcatttaatttatggtaacaaaatttgaat-----------atagcttattagacaa 3857288  T
Q  101 aatgaaataatattaagttacaacttataatcatttcata 140  Q
    ||||| ||||||| ||||||||||||| | ||||||||||    
T  3857287 aatgacataatatcaagttacaacttacactcatttcata 3857248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 15667676 - 15667810
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaa 100  Q
    |||||||||||| |||||||||||| | |||||||||  ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||  ||    
T  15667676 actcaatactcacagaaatcaaaatctctatatactctgttgctcatttaatttatcgtaacaaaatttgaatcactgttcataatagc-tattagataa 15667774  T
Q  101 aatgaaataatattaagttacaacttataatcatttc 137  Q
    ||||| ||| || |||||||||||||| |||||||||    
T  15667775 aatgacatacta-taagttacaacttacaatcatttc 15667810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 15667958 - 15668066
Alignment:
Q  149 agaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgat 248  Q
    ||||| ||||||||||||||||||||| | ||||||||||||| |||| ||||||| ||| |||||||| ||||||||||||||| ||||||||||||||    
T  15667958 agaaagaattgttaccaacaagatcaaggatgtgtggttcaataacttgatgatatgttataccgagcgggagatattcaagtcacttgatgatgttgat 15668057  T
Q  249 attcttcga 257  Q
    ||| |||||    
T  15668058 attattcga 15668066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 3857077 - 3856964
Alignment:
Q  138 ataagctcgtaagaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttg 237  Q
    |||||| ||| ||||||||||||||||| ||||||||||| ||||||||| |||||||| |||| || |||| | ||| | |||||||||||||||||||    
T  3857077 ataagcccgtgagaaataattgttaccatcaagatcaacgatgtgtggttaaatgacttgatgacatgttactcagagtgggagatattcaagtcatttg 3856978  T
Q  238 atgatgttgatatt 251  Q
    ||||||||||||||    
T  3856977 atgatgttgatatt 3856964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 43137127 - 43137220
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||||||||||| ||| |||||||||||||| ||||||| |||||||||||| ||||||||||||||| ||||||||||||||||| |||||    
T  43137127 caacaagatcaacgatgtatggttcaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcga 43137220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 22527229 - 22527311
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcat 83  Q
    |||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  22527229 actcaatactcacaaaaatcaaaatctatatatactccattgctcatttaatttatggtatcaaaatttgaatcattattcat 22527311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 31989029 - 31989122
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||||||||||  ||||||||| |||||||| ||||||| |||||||||||| ||||||||||||||| ||||||||||||||||| |||||    
T  31989029 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcga 31989122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 138 - 257
Target Start/End: Original strand, 51261953 - 51262072
Alignment:
Q  138 ataagctcgtaagaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttg 237  Q
    |||||||||| | ||| |||||||||||||||||||||||  ||||||| |||||| || ||||||| ||||||  ||||  |||||||||||||| |||    
T  51261953 ataagctcgtgaaaaagaattgttaccaacaagatcaacgaagtgtggtacaatgaattgatgatatgttacactaagcggaagatattcaagtcacttg 51262052  T
Q  238 atgatgttgatattcttcga 257  Q
    |||||||||||||| |||||    
T  51262053 atgatgttgatattattcga 51262072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 37382044 - 37381951
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||||||||||| ||||||||| |||||||  ||||||| |||||| ||||  ||||||||||||||||||||||||||| ||||| |||||    
T  37382044 caacaagatcaacgatgtgtggttaaatgactcgatgatatattacactgagcatgagatattcaagtcatttgatgatgtttatattattcga 37381951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 53710398 - 53710491
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||||||||||  ||  ||||| |||||||| ||||| | |||||||||||| ||||||||||||||| ||||||||||||||||| |||||    
T  53710398 caacaagatcaacaatggatggttgaatgacttgatgatctgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcga 53710491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 24908568 - 24908475
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||||||||||  ||||||||| |||||||| ||||||| ||||||| |||  ||||||||||||||  |||| |||||||||||| |||||    
T  24908568 caacaagatcaacaatgtgtggttgaatgacttgatgatatgttacaccaagcaggagatattcaagtcgcttgaagatgttgatattattcga 24908475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 101
Target Start/End: Complemental strand, 24989026 - 24988960
Alignment:
Q  32 atactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaaa 101  Q
    ||||||| |||||||||||||||||||||||||   |||||||||||| |||||||||||||||| ||||    
T  24989026 atactcctttgctcatttaatttatggtaacaa---ttgaatcactatacataatagcttattagacaaa 24988960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 43585836 - 43585904
Alignment:
Q  183 tggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatatt 251  Q
    ||||| |||||||| ||||||| |||||||||||| ||||||| ||||| | |||| |||||| |||||    
T  43585836 tggttgaatgacttgatgatatgttacaccgagcgggagatatccaagttacttgacgatgttaatatt 43585904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 17407 - 17543
Alignment:
Q  1 actcaatactcaaagaaatcaaaatttatatatactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaa 100  Q
    |||||| ||||| | |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||  || |||||||||||||| |||    
T  17407 actcaacactcacaaaaatcaaaatttatatatactccattgctcgtt-aatttatggtaacaaaatttgaatcact--tcctaatagcttattagacaa 17503  T
Q  101 aatgaaataatattaagttacaacttataatcatttcata 140  Q
    ||||| ||||||| ||||||||||||| | ||| ||||||    
T  17504 aatgacataatatcaagttacaacttacactcacttcata 17543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 138 - 257
Target Start/End: Original strand, 17714 - 17833
Alignment:
Q  138 ataagctcgtaagaaataattgttaccaacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttg 237  Q
    |||||||| | |||||||||||||| |||||||||||||| |||||||||||||||||| ||||||  ||||| |||||| |||||||| |||||| |||    
T  17714 ataagctcattagaaataattgttatcaacaagatcaacgatgtgtggttcaatgacttgatgatacgttacatcgagcgggagatatttaagtcacttg 17813  T
Q  238 atgatgttgatattcttcga 257  Q
     ||||||||||||| |||||    
T  17814 ctgatgttgatattattcga 17833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 135029 - 134936
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    ||||||||| |||  ||||||||| |||||||| ||||||| |||||||||||| ||||||||||||||| ||||||||||||||||| |||||    
T  135029 caacaagatgaacaatgtgtggttaaatgacttgatgatatgttacaccgagcgggagatattcaagtcacttgatgatgttgatattattcga 134936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 435556 - 435438
Alignment:
Q  138 ataagctcgtaagaaataattgttaccaacaagatcaacgttgtgtggttcaatgactt-----tatgatatcttacaccgagcgagagatattcaagtc 232  Q
    |||||||||| ||||| |||||||||||||||||||||   ||||||| ||||||||||     |||||||| ||||||||||||  |||||||||||||    
T  435556 ataagctcgtgagaaaaaattgttaccaacaagatcaataatgtgtggctcaatgacttgatgatatgatatgttacaccgagcggaagatattcaagtc 435457  T
Q  233 atttgatgatgttgatatt 251  Q
    | ||||| |||||||||||    
T  435456 acttgattatgttgatatt 435438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 214336 - 214243
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||||||||||  | ||||||| |||||||| ||||||| |||||||||||  ||||||||| ||||| ||||||||||||||||| |||||    
T  214336 caacaagatcaacaatatgtggttgaatgacttgatgatatgttacaccgagcaggagatattcgagtcacttgatgatgttgatattattcga 214243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 259918 - 260011
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||||||||||  || ||||||||||||||| ||||||| ||||| |||||| || |||||||||||| |||||||  |||||||| |||||    
T  259918 caacaagatcaacaatgagtggttcaatgacttgatgatatgttacatcgagcgggatatattcaagtcacttgatgacattgatattattcga 260011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 845 - 911
Alignment:
Q  32 atactccattgctcatttaatttatggtaacaaaatttgaatcactattcataatagcttattaggcaaa 101  Q
    ||||||| |||||||||||||||||||||||   |||||||||||||| |||||||||||||||| ||||    
T  845 atactcctttgctcatttaatttatggtaac---atttgaatcactatacataatagcttattagacaaa 911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 1429 - 1489
Alignment:
Q  197 tatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    |||||||| |||||||||||| ||||||||||| ||| ||||||||||||||||| |||||    
T  1429 tatgatatgttacaccgagcgggagatattcaaatcacttgatgatgttgatattattcga 1489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 15814 - 15907
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatattcttcga 257  Q
    ||||||||| |||  || |||||| ||||| || ||||||| |||||||||||| ||||||||||| ||| |||||||  |||||||| |||||    
T  15814 caacaagattaacaatgagtggttaaatgatttgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatattattcga 15907  T

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Target: scaffold0012 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 251
Target Start/End: Original strand, 197105 - 197192
Alignment:
Q  164 caacaagatcaacgttgtgtggttcaatgactttatgatatcttacaccgagcgagagatattcaagtcatttgatgatgttgatatt 251  Q
    ||||||||| |||  || |||||| ||||| || ||||||| |||||||||||| ||||||||||| ||| |||||||  ||||||||    
T  197105 caacaagattaacaatgagtggttaaatgaattgatgatatgttacaccgagcgggagatattcaaatcacttgatgacattgatatt 197192  T

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