View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19786_low_89 (Length: 258)
Name: NF19786_low_89
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_89 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 3829491 - 3829247
Alignment:
| Q |
1 |
agatgtataaaaccatgatgattcggccaaataatgatactgtaccattttttgaaactttgacatgagttatcttcaccttattctgagtcgaaagaag |
100 |
Q |
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| T |
3829491 |
agatgtataaaactatgatgattcggccaaataatgatactgtaccattttttgaaactttgacatgagttatcttcaccttattctgagtcgaaagaag |
3829392 |
T |
|
| Q |
101 |
cccttagcagttcttcatgatgttagtggaatcatcaaacctaaaaggtaatacaacaattagttgtgaaattcacatcatggacataaactattgattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3829391 |
cccttagcagttcttcatgatgttagtggaatcatcaaacctaaaaggtaatacaacaattagttgtgaaattcacatcatggacataaactattgattt |
3829292 |
T |
|
| Q |
201 |
ctcgatcaacattttgttttgcccttttcagaatgaccctgctct |
245 |
Q |
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| T |
3829291 |
ctcgatcaacattttgttttgcccttttcagaatgaccctgctct |
3829247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 72 - 245
Target Start/End: Original strand, 49769104 - 49769278
Alignment:
| Q |
72 |
atcttcaccttattctgagtcgaaagaagcccttagcagttcttcatgatgttagtggaatcatcaaacctaaaaggtaatacaacaattagtt-gtgaa |
170 |
Q |
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||||||||||||| | ||||||||||||||| || | ||||||||||||||||||||||| ||||| |||||||||||| |||||| | || ||||| |
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| T |
49769104 |
atcttcaccttatcccgagtcgaaagaagccgctaacggttcttcatgatgttagtggaataatcaagcctaaaaggtaagacaacattgccttagtgaa |
49769203 |
T |
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| Q |
171 |
attcacatcatggacataaactattgatttctcgatcaacattttgttttgcccttttcagaatgaccctgctct |
245 |
Q |
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||||||| || |||| ||| ||| ||||||| || |||| ||||||||||| || ||||||||| ||||||| |
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| T |
49769204 |
attcacacgattgacagaaaatatctatttctcaattaacaatttgttttgcctgttgcagaatgacactgctct |
49769278 |
T |
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