View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19786_low_93 (Length: 250)
Name: NF19786_low_93
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_93 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 9e-82; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 29953554 - 29953787
Alignment:
| Q |
1 |
cattgatctaggaaatgaagaaaatcatgtcattgatcgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgacc |
100 |
Q |
| |
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||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||| |
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|
| T |
29953554 |
cattgatctagaaaatgaagaaaatcatttcattgatcgaactaacatcaaggcaattttactagacttgactgtggcagcaattgatacatctgctacc |
29953653 |
T |
|
| Q |
101 |
gcgattgaatgggctatgtccgaacttctaaggcatccaagagtgatgaaaaatcttcaagatgagatacaaaatgaagtaggaaatgaaagaatggttg |
200 |
Q |
| |
|
| ||||||||||||| | |||||||||||||| |||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
29953654 |
gtgattgaatgggctttatccgaacttctaagacatccaagggtaatgaaaatccttcaagatgagatacaaaatgaagtaggaaatgaaagaatgattg |
29953753 |
T |
|
| Q |
201 |
aagagaaagatttgaacaagttaagctacttaga |
234 |
Q |
| |
|
||||||||||||| | || ||||| |||||||| |
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|
| T |
29953754 |
aagagaaagatttagagaacttaagttacttaga |
29953787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 29944636 - 29944857
Alignment:
| Q |
16 |
tgaagaaaatcatgtcattgatcgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgattgaatgggct |
115 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||| || || ||||||||| ||| | ||||| |||||| |
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|
| T |
29944636 |
tgaacaaaatcatgtcattgatcgaactaacatcaaagctattttactagacatggttgtggcatcatttagtacatctgctaccacaattgagtgggct |
29944735 |
T |
|
| Q |
116 |
atgtccgaacttctaaggcatccaagagtgatgaaaaatcttcaagatgagatacaaaatgaagtaggaaatgaaagaatggttgaagagaaagatttga |
215 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||| || ||||||| |
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|
| T |
29944736 |
ttatccgaacttttaaggcatccaagagtgatgaaaaatcttcaagatgaaatacaaaatgaagtaggaaataagagaatggttgaagaaaaggatttga |
29944835 |
T |
|
| Q |
216 |
acaagttaagctacttagatat |
237 |
Q |
| |
|
| || || | ||||||||||| |
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|
| T |
29944836 |
agaattttaattacttagatat |
29944857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 30043881 - 30043698
Alignment:
| Q |
16 |
tgaagaaaatcatgtcattgatcgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgattgaatgggct |
115 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||| ||||| || |||||| | ||||||||||||||||||||||| ||| |||||||||||||| |
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|
| T |
30043881 |
tgaacaaaatctcgtcattgatcgaactaacatcaaggctattttgctcgacatgatagtggcagcaattgatacatctgctacctcgattgaatgggct |
30043782 |
T |
|
| Q |
116 |
atgtccgaacttctaaggcatccaagagtgatgaaaaatcttcaagatgagatacaaaatgaagtaggaaatgaaagaatggtt |
199 |
Q |
| |
|
| || |||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
30043781 |
ttatctgaacttttaagacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtt |
30043698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 222
Target Start/End: Original strand, 29995328 - 29995534
Alignment:
| Q |
16 |
tgaagaaaatcatgtcattgatcgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgattgaatgggct |
115 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||| ||||| || |||||| | ||||||||||| ||||||||||| ||| |||||||||||||| |
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|
| T |
29995328 |
tgaacaaaatctcgtcattgatcgaactaacatcaaggctattttgctcgacatgatagtggcagcaatcgatacatctgctacctcgattgaatgggct |
29995427 |
T |
|
| Q |
116 |
atgtccgaacttctaaggcatccaagagtgatgaaaaatcttcaagatgagatacaaaatgaagtaggaaatgaaagaatggttgaagagaaagatttga |
215 |
Q |
| |
|
| || |||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| | |||| ||||||||| ||| |
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|
| T |
29995428 |
ttatctgaacttttaagacatccaagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaaagattgaggagaaagatatga |
29995527 |
T |
|
| Q |
216 |
acaagtt |
222 |
Q |
| |
|
| ||||| |
|
|
| T |
29995528 |
agaagtt |
29995534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 30007117 - 30007338
Alignment:
| Q |
16 |
tgaagaaaatcatgtcattgatcgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgattgaatgggct |
115 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||| ||||| || |||||| | | |||| || || |||||||||| ||| ||||||| |||||| |
|
|
| T |
30007117 |
tgaacaaaatctcgtcattgatcgaactaacatcaaggctattttgctcgacatgatagcggcatcagttcatacatctgctaccacgattgagtgggct |
30007216 |
T |
|
| Q |
116 |
atgtccgaacttctaaggcatccaagagtgatgaaaaatcttcaagatgagatacaaaatgaagtaggaaatgaaagaatggttgaagagaaagatttga |
215 |
Q |
| |
|
| || ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| |
|
|
| T |
30007217 |
ttatctgaacttctaaggcattcaagagtgatgaaaattcttcaagatgagatacaaaatgaagtaggaaataaaagaatggttgaagagaaggatctga |
30007316 |
T |
|
| Q |
216 |
acaagttaagctacttagatat |
237 |
Q |
| |
|
| ||||| | ||||||||||| |
|
|
| T |
30007317 |
agaagtttaattacttagatat |
30007338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 39 - 237
Target Start/End: Original strand, 29964860 - 29965058
Alignment:
| Q |
39 |
gaactaacatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgattgaatgggctatgtccgaacttctaaggcatcc |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||| | | ||| ||||||| |||||| | || |||||| | || ||||| |
|
|
| T |
29964860 |
gaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggctttatctgaacttttcagacatcc |
29964959 |
T |
|
| Q |
139 |
aagagtgatgaaaaatcttcaagatgagatacaaaatgaagtaggaaatgaaagaatggttgaagagaaagatttgaacaagttaagctacttagatat |
237 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||| ||||| | ||||||||||| |
|
|
| T |
29964960 |
aagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttgaagaagttgaattacttagatat |
29965058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 39 - 237
Target Start/End: Complemental strand, 30009938 - 30009740
Alignment:
| Q |
39 |
gaactaacatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgattgaatgggctatgtccgaacttctaaggcatcc |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||||| | | ||| ||||||| |||||| | || |||||| | || ||||| |
|
|
| T |
30009938 |
gaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggctttatctgaacttttcagacatcc |
30009839 |
T |
|
| Q |
139 |
aagagtgatgaaaaatcttcaagatgagatacaaaatgaagtaggaaatgaaagaatggttgaagagaaagatttgaacaagttaagctacttagatat |
237 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||| ||||| | ||||||||||| |
|
|
| T |
30009838 |
aagagtgatgaaaaagcttcaagatgagatacaaaatgaagtaggaaataaaagaatggtcgaagagaatgatttgaagaagttgaattacttagatat |
30009740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 32 - 237
Target Start/End: Complemental strand, 30068383 - 30068177
Alignment:
| Q |
32 |
attgatcgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgattg-aatgggctatgtccgaacttcta |
130 |
Q |
| |
|
||||||||| |||||||||| || ||||| || |||||| | ||||||||||||||||||||||| ||| ||||| |||||||| | || | |||| || |
|
|
| T |
30068383 |
attgatcgatctaacatcaaagctattttgctcgacatgatagtggcagcaattgatacatctgctacctcgattttaatgggctttatctgcactttta |
30068284 |
T |
|
| Q |
131 |
aggcatccaagagtgatgaaaaatcttcaagatgagatacaaaatgaagtaggaaatgaaagaatggttgaagagaaagatttgaacaagttaagctact |
230 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||| | |||| |
|
|
| T |
30068283 |
aggcatccaagagtgatgaaaattcttcaagatgagatacaaaatgaagtaggaaataaaagaatggttgaagagaaggatttgaagaagttgaattact |
30068184 |
T |
|
| Q |
231 |
tagatat |
237 |
Q |
| |
|
||||||| |
|
|
| T |
30068183 |
tagatat |
30068177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 26 - 237
Target Start/End: Original strand, 29946618 - 29946829
Alignment:
| Q |
26 |
catgtcattgatcgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgattgaatgggctatg-tccgaa |
124 |
Q |
| |
|
||||| ||||||||| | ||||| |||||| | |||||||||| | || ||||||||||||| |||||||| |||||||||||||||||| | || ||| |
|
|
| T |
29946618 |
catgttattgatcgaccaaacattaaggca-tattactagacacggttatggcagcaattgaaacatctgctaccgcgattgaatgggcttttatctgaa |
29946716 |
T |
|
| Q |
125 |
cttctaaggcatccaagagtgatgaaaaatcttcaagatgagatacaaaatgaagtaggaaatgaaagaatggttgaagagaaagatttgaacaagttaa |
224 |
Q |
| |
|
||| ||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||| | ||||||| |
|
|
| T |
29946717 |
cttttaaggaatccaagagtgatgaaaacccttcaagatgatatacaaaatgaagtaggaaataaaagaatggtcgaagagaaagatttagagaagttaa |
29946816 |
T |
|
| Q |
225 |
gctacttagatat |
237 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
29946817 |
gttacttagatat |
29946829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 29 - 216
Target Start/End: Original strand, 30001014 - 30001201
Alignment:
| Q |
29 |
gtcattgatcgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgattgaatgggctatgtccgaacttc |
128 |
Q |
| |
|
|||||||||||||| | ||||||||| ||||| || |||||| | | |||| |||||||||||||| | | || ||| || |||||| | || |||||| |
|
|
| T |
30001014 |
gtcattgatcgaacgatcatcaaggctattttgctcgacatgataggggcatcaattgatacatcttcaaacgtgatagagtgggctttatctgaacttt |
30001113 |
T |
|
| Q |
129 |
taaggcatccaagagtgatgaaaaatcttcaagatgagatacaaaatgaagtaggaaatgaaagaatggttgaagagaaagatttgaa |
216 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| | |||||||||||||| || |||||||| |
|
|
| T |
30001114 |
taaggcatccaagagtgatgaaaattcttcaagatgaaatacaaaatgaagtaggaaataagagaatggttgaagaaaaggatttgaa |
30001201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 31950891 - 31950819
Alignment:
| Q |
104 |
attgaatgggctatgtccgaacttctaaggcatccaagagtgatgaaaaatcttcaagatgagatacaaaatg |
176 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||| |||||||| || |||||| ||||| || |||||| |
|
|
| T |
31950891 |
attgaatgggccatgtctgaactcttaaggcatccaaatgtgatgaagaaacttcaaaatgagctagaaaatg |
31950819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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