View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19786_low_94 (Length: 250)
Name: NF19786_low_94
Description: NF19786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19786_low_94 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 38136047 - 38136287
Alignment:
| Q |
10 |
attatactaatgagcatgctatttccattcatgacgaagacagagaatttcgctactcttggatgagctgctcctaattcattgctaactcgcacactga |
109 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38136047 |
attacactaatgagcatgctatttccattcacgacgaagacagagaatttcgctactcttggatgagctgctcctaattcattgctaactcgcacactga |
38136146 |
T |
|
| Q |
110 |
aatcttagaatgtacttttacatgtttgtatggaagttgtttaaatgaaaaacattgtttttgacaattgtcgcaaaccttgctgctgcaccaaggccca |
209 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38136147 |
aatcatagaatgtacttttacatgtttgtatggaagttgtttaaatgaaaaacattgtttttgacaattgtcgcaaaccttgctgctgcaccaaggccca |
38136246 |
T |
|
| Q |
210 |
acataacttgcatatcccagtttaagtaattcatgctgaaa |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38136247 |
acataacttgcatatcccagtttaagtaattcatgctgaaa |
38136287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 39312632 - 39312399
Alignment:
| Q |
16 |
ctaatgagcatgctatttccattcatgacgaagacagagaatttcgctactcttggatgagctgctcctaattcattgctaactcgcacactgaaatctt |
115 |
Q |
| |
|
|||||||| ||||||||| |||||| |||||||||||| ||||| ||||||||||||||| |||||||||| || ||||||||||||| |||||||| | |
|
|
| T |
39312632 |
ctaatgaggatgctatttgcattcacgacgaagacagaaaattttgctactcttggatgatctgctcctaactc--tgctaactcgcaccctgaaatcat |
39312535 |
T |
|
| Q |
116 |
agaatgtacttttac-atgtttgtatggaagttgtttaaatgaaaaacattgtttttgacaattgtcgcaaaccttgctgctgcaccaaggcccaacata |
214 |
Q |
| |
|
|| || |||||||| |||||||| ||||||||||||||||||||| ||||||||||| | |||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
39312534 |
aggatctacttttaatatgtttgtgtggaagttgtttaaatgaaaagcattgtttttgtcgattgtcactaaccttgctgctgcaccaaggcccaacata |
39312435 |
T |
|
| Q |
215 |
acttgcatatcccagtttaagtaattcatgctgaaa |
250 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39312434 |
acttgcatatcccagtctaagtaattcatgctgaaa |
39312399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 39317085 - 39316856
Alignment:
| Q |
19 |
atgagcatgctatttccattcatgacgaagacagagaatttcgctactcttggatgagctgctcctaattcattgctaactcgcacactgaaatcttaga |
118 |
Q |
| |
|
||||| || ||||| ||||||| |||||||| | ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
39317085 |
atgaggatactattcccattcacgacgaagatggcaaattttgctactcttggatgagctgctcctaattcattgctaattcgcacactgaaattacagg |
39316986 |
T |
|
| Q |
119 |
atgtacttttacatgtttgtatggaagttgtttaaatgaaaaacattgtttttga-caattgtcgcaaaccttgctgctgcaccaaggcccaacataact |
217 |
Q |
| |
|
| |||||||| || | || | || |||| ||||| || |||||||||||| |||||||| | ||||| ||||||||||||||||||||||| ||| |
|
|
| T |
39316985 |
acctactttta-atataagt--gaaaattgtctaaatagaacacattgtttttggtcaattgtcactaacctggctgctgcaccaaggcccaacatgact |
39316889 |
T |
|
| Q |
218 |
tgcatatcccagtttaagtaattcatgctgaaa |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
39316888 |
tgcatatcccagtttaagtaattcatgctgaaa |
39316856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University