View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_high_1 (Length: 893)
Name: NF19787_high_1
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_high_1 |
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| [»] scaffold0187 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 800; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 800; E-Value: 0
Query Start/End: Original strand, 12 - 871
Target Start/End: Complemental strand, 4012440 - 4011580
Alignment:
| Q |
12 |
catcatcatcagcctcttagtgggaaaaggatgaagccaatcttggataaatacattgttacttaatttagtgggaaaaggctttggttgttattgtttg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4012440 |
catcatcatcagcctcttagtgggaaaaggatgaagccaatcttggataaatgcattgttacttaatttagtgggaaaaggctttggttgttattgtttg |
4012341 |
T |
|
| Q |
112 |
aatgtattgatgttgagtttgactcacattcatgataagtagacaggcgcttgaccgcagcataggggtaaacttgtaatatggaatgtagcatttaatc |
211 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4012340 |
aatgtattaatgttgagtttgactcacattcatgataagtaggcaggcgcttgaccgcagcataggggtaaacttgtaatatggaatgtagcatttaatc |
4012241 |
T |
|
| Q |
212 |
acaactttgtactttgtaaccttaagcaatgcataatagaaaacaacaacggccactttgttttttgtagtcataggctcaattgaccaaactctgtgat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4012240 |
acaactttgtactttgtaaccttaagcaatgcataatagaaaacaacaacggccactttgttttttgtagtcataggctcaattgaccaaactctgtgat |
4012141 |
T |
|
| Q |
312 |
caactgtttctgtctttcgtgcgtttatttatctgtctactttagagtcgggtttgctgttctagcaattgttaaaatagatgttgggattctggtttcc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4012140 |
caactgtttctgtctttcgtgcgtttatttatctgtctactttagagtcgggtttgctgttctagcaattgttaaaatagatgttgggattctggtttcc |
4012041 |
T |
|
| Q |
412 |
tgcaaatgcaacaaaatgagcttaattctgaaacttgtggaatattctgtgtttataggttttgaggatgacacctgaagtaacataatagatcc-aggc |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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|
| T |
4012040 |
tgcaaatgcaacaaaatgagcttaattctggaacttgtggaatattctgtgtttataggttttgaggatgacatctgaagtaacataatagatccaaggc |
4011941 |
T |
|
| Q |
511 |
atattgaatattctttgaacaggctaatgcatatgtttttagattgtgaatttgtgatgactcaatcaatgttccattagtcctagttggttttgttgtg |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4011940 |
atattgaatattctttgaacaggctaatgcatatgtttttagattgtgaatttgtgatgactcaatcaatgttccattagtcctagttggttttgttgtg |
4011841 |
T |
|
| Q |
611 |
agttttaattgcaatgctgcaaattcacactacacagttgtaattgctttacaatttatgcatcattttgttatggaacttttaacagctgcagttatga |
710 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
4011840 |
agttttaattgcaatgctgcaaattcacactacacagttgtaattgctttacaatttatgcatcattttgttatggaac-tttaacagctgcagttatga |
4011742 |
T |
|
| Q |
711 |
aactttttgctaactcatcgtttttgttccctgcatacta--ttccatgaatttgactacgacgcttttgtaattgcaattttggtccctaaattttgat |
808 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4011741 |
aactttttgctaactcatcg-ttttgttccctgcatactattttccatgaatttgactacgacgcttttgtaattgcaattttggtccctaaattttgat |
4011643 |
T |
|
| Q |
809 |
aattttttacacttttggggactaaaagtgccaaaaatcctcaaaattgagtgaccaaaactg |
871 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
4011642 |
aattttttacacttttggggaccaaaattgccaaaaatcctcaaaattgagtgaccaaaactg |
4011580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 781; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 781; E-Value: 0
Query Start/End: Original strand, 12 - 872
Target Start/End: Original strand, 13976756 - 13977616
Alignment:
| Q |
12 |
catcatcatcagcctcttagtgggaaaaggatgaagccaatcttggataaatacattgttacttaatttagtgggaaaaggctttggttgttattgtttg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13976756 |
catcatcatcagcctcttagtgggaaaaggatgaagccaatcttggataaatgcattgttacttaatttagtgggaaaaggctttggttgttattgtttg |
13976855 |
T |
|
| Q |
112 |
aatgtattgatgttgagtttgactcacattcatgataagtagacaggcgcttgaccgcagcataggggtaaacttgtaatatggaatgtagcatttaatc |
211 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13976856 |
aatgtatttatgttgagtttgactcacattcatgataagtaggcaggcgcttgaccgcagcataggggtaaacttgtaatatggaatgtagcatttaatc |
13976955 |
T |
|
| Q |
212 |
acaactttgtactttgtaaccttaagcaatgcataatagaaaacaacaacggccactttgttttttgtagtcataggctcaattgaccaaactctgtgat |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13976956 |
acaactttgtactttgtaaccttaagcaatgcataatagaaaacaacaacggccactttgttttttgtagtcttaggctcaattgaccaaactctgtgat |
13977055 |
T |
|
| Q |
312 |
caactgtttctgtctttcgtgcgtttatttatctgtctactttagagtcgggtttgctgttctagcaattgttaaaatagatgttgggattctggtttcc |
411 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
13977056 |
caactgtttctgtctttcgtgcttttatttatctgtctactttagagtcgggtttgctgttctagcaattgttaaaataga-gttgggattctggtttcc |
13977154 |
T |
|
| Q |
412 |
tgcaaatgcaacaaaatgagcttaattctgaaacttgtggaatattctgtgtttataggttttgaggatgacacctgaagtaacataatagatcc-aggc |
510 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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|
| T |
13977155 |
tgcaaatgcaacaaaatgagcttaattctggaacttgtggaatattctgtgtttataggttttgaggatgacatctgaagtaacataatagatccaaggc |
13977254 |
T |
|
| Q |
511 |
atattgaatattctttgaacaggctaatgcatatgtttttagattgtgaatttgtgatgactcaatcaatgttccattagtcctagttggttttgttgtg |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13977255 |
atattgaatattctttgaacaggctaatgcatatgtttttagattgtgaatttgtgatgactcaatcaatgttccattagtcctagttggttttgttgtg |
13977354 |
T |
|
| Q |
611 |
agttttaattgcaatgctgcaaattcacactacacagttgtaattgctttacaatttatgcatcattttgttatggaacttttaacagctgcagttatga |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13977355 |
agttttaattgcaatgctgcaaattcacactacacagttgtaattgttttacaatttatgcatcattttgttatggaac-tttaacagctgcagttatga |
13977453 |
T |
|
| Q |
711 |
aactttttgctaactcatcgtttttgttccctgcatacta--ttccatgaatttgactacgacgcttttgtaattgcaattttggtccctaaattttgat |
808 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
13977454 |
aactttttgctaactcatcg-ttttgttccctgcatactattttccatgaatttgactacgacgcttttgtaattgcaattttggtccctaaatttttat |
13977552 |
T |
|
| Q |
809 |
aattttttacacttttggggactaaaagtgccaaaaatcctcaaaattgagtgaccaaaactgt |
872 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
13977553 |
aattttttacacttttggggactaaaagtgccaaaaatcctcaaaattgagcgaccaaaactgt |
13977616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 254
Target Start/End: Complemental strand, 2086 - 2010
Alignment:
| Q |
177 |
gggtaaacttgtaatatggaatgtagcatttaatcacaactttgtactttgtaaccttaagcaatgcataatagaaaa |
254 |
Q |
| |
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|||||||||||||||||||| |||| ||| |||||||| |||||| ||||||||| ||| || |||||||||||||| |
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|
| T |
2086 |
gggtaaacttgtaatatggatagtagtattgaatcacaa-tttgtagtttgtaaccctaaacattgcataatagaaaa |
2010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 330 - 375
Target Start/End: Complemental strand, 15853463 - 15853418
Alignment:
| Q |
330 |
gtgcgtttatttatctgtctactttagagtcgggtttgctgttcta |
375 |
Q |
| |
|
|||||||||||||||||| |||||||| | ||||||||||||||| |
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|
| T |
15853463 |
gtgcgtttatttatctgttcactttagaattgggtttgctgttcta |
15853418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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