View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_high_12 (Length: 444)
Name: NF19787_high_12
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 14 - 434
Target Start/End: Complemental strand, 3994745 - 3994321
Alignment:
| Q |
14 |
attcaaacttaagccaaaacttgtataagtggaatgtccaatcaatcatctgtttagtcaattaggaaattgaatgttggttttgttgctaggttgagag |
113 |
Q |
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| T |
3994745 |
attcaaacttaagccaaaacttgtataagtggaatgtccaatcaatcatctgtttagtcaattaggaaattgaatgttggttttgttgctaggttgagag |
3994646 |
T |
|
| Q |
114 |
ggataaggagtgaagtgataaaaagaagttgagagctcgatattcatttctagcataatactaacaatattttgcaat--gatcattctacaaaaatcat |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
3994645 |
ggataaggagtgaagtgataaaaagaagttgagagctcgatattcatttctagcataatactaacaatattttacaatgagatcattctacaaaaatcat |
3994546 |
T |
|
| Q |
212 |
ctgagtcaannnnnnnnnnnnnnnnnnnacaaatagagatgatcattattggtcaaatatttaagaggtgttgattcttgagtgctacataggaattttt |
311 |
Q |
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| T |
3994545 |
ctgagtcaatttttaatttttgttttttacaaatagagatgatcattattggtcaaatatttaacaggtgttgattcttgagtgctacataggaattttt |
3994446 |
T |
|
| Q |
312 |
acatttataacacatgtaagccaacactgacagttggcttcatgaactagagaggtgactttctaccttccatcaactttgctagcactagca-ttttta |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
3994445 |
acatttataacacatgtaagccaacactgacagttggcttcatgaactagagaggtgactttctacctaccatcaactttgctagcactagcatttttta |
3994346 |
T |
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| Q |
411 |
ttaa-aattctatcttttgcctttg |
434 |
Q |
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|||| |||||||||||||||||||| |
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| T |
3994345 |
ttaagaattctatcttttgcctttg |
3994321 |
T |
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