View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_high_16 (Length: 426)
Name: NF19787_high_16
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 9 - 410
Target Start/End: Original strand, 38930585 - 38930987
Alignment:
| Q |
9 |
gagatgaatatagtcatatttacttcaagaataatttcatgcaagcatgaatcgtatatagccaacaagttgcacaatcttatgacacaatctatggtat |
108 |
Q |
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| T |
38930585 |
gagatgaatatagtcttatttacttcaagaataatttcatgcaagcatgaatcgtatatagccaacaagttgcacaatcttatgacacaatctatggtat |
38930684 |
T |
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| Q |
109 |
tttaattctatcaaacatttatagatcattgttatgagactctaaaagtacattattttatatatttccatatggagtttaactcaattgatgtatattc |
208 |
Q |
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| T |
38930685 |
tttaattctatcaaacatttatagatcattgttatgagactctaaaagtacattattttatatatttccatatggagtttaactcaattaatgtatattc |
38930784 |
T |
|
| Q |
209 |
acattacgaaattggtatgaacattttccggccgtccttcggaacctttcgatgaagttcgtagctgattcatccctcttgtttcaaattcattacatcg |
308 |
Q |
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| T |
38930785 |
acattacgaaattggtatgaacattttccagccgtccttctgaacctttcgatgaagttcgtagctgattcatccctcttgtttcaaattcattacatcg |
38930884 |
T |
|
| Q |
309 |
gttgttgtaacctcaggttgatg-ccagtagaacctatcattgaaacatattttcctgtatgtgcccaagttcaagtttgtaacgagtttggtgggagag |
407 |
Q |
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| T |
38930885 |
gttgttgtaacctcaggttgatgcccagtagaacctatcattgaaacatattctcctgtatgtgcccaagttcaagtttgtaacgagtttggtgggagag |
38930984 |
T |
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| Q |
408 |
agg |
410 |
Q |
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| T |
38930985 |
agg |
38930987 |
T |
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