View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19787_high_18 (Length: 385)
Name: NF19787_high_18
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 43602821 - 43603177
Alignment:
| Q |
17 |
caaatcacgtctatagcattgtcatcaagtggtttactttacacaggctctgattccaatgttgtaaggtgttggaaactgcctgagttcactgaatgtg |
116 |
Q |
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| T |
43602821 |
caaatcacgtccatagcattgtcatcaagtggtttactttacacaggctctgattccaatgttgtaaggtgttggaaactgcctgagttcactgaatgtg |
43602920 |
T |
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| Q |
117 |
gacagttgaagactaaagcttcaaaagttgtggctattgaggtttccaatgacactgtttatgcagcttatggtgatggcaagattagagtgtggacaat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43602921 |
gacagttgaagactaaagcttcaaaagttgtggctattgaggtttccaatgacactgtttatgcagcttatggtgatggcaagatcagagtgtggacaat |
43603020 |
T |
|
| Q |
217 |
aatttgggataacaaggtgttgaaacatgttcgatctgctactattcctaagacacttggctatgttcgtagctacatcgcagggaaagacaagacagta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43603021 |
aatttgggataacaaggtgttgaaacatgttcgatctgctactattcctaagacacttggctatgttcgtagctacatcgcagggaaagacaagacagta |
43603120 |
T |
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| Q |
317 |
agtctagtaccttaattgcctccatagctgtaatannnnnnnatatacgagtataat |
373 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43603121 |
agtctagtaccttaattgcctccatagctgtaatatttttttatatacgagtataat |
43603177 |
T |
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