View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19787_high_29 (Length: 330)
Name: NF19787_high_29
Description: NF19787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19787_high_29 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-175; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 1606127 - 1606456
Alignment:
| Q |
1 |
taattctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
1606127 |
taattctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacccagggggcttactaaagtgtccatgaaagttt |
1606226 |
T |
|
| Q |
101 |
tcatcaccataactctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgaca |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1606227 |
tcatcaccataactcttgaatattgttgccaaggcctgcccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgaca |
1606326 |
T |
|
| Q |
201 |
attgtggaatgaaattccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgtta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606327 |
attgtggaatgaaattccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgtta |
1606426 |
T |
|
| Q |
301 |
caattttggaaaaccactgcggcattgcca |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1606427 |
caattttggaaaaccactgcggcattgcca |
1606456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 1629425 - 1629754
Alignment:
| Q |
1 |
taattctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
1629425 |
taattctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttt |
1629524 |
T |
|
| Q |
101 |
tcatcaccataactctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgaca |
200 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
1629525 |
tcatcaccattactcttgaatattgttgccaaggtctgcccaagaaggttttgtacttgtcaacaacaggttttagatctgatgcagccctaatttgaca |
1629624 |
T |
|
| Q |
201 |
attgtggaatgaaattccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgtta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
1629625 |
attgtggaatgaaattccagtgttttggaatgggtcacctcgaccttgggcagtgatcatgtttgcttggccatctaaaggctttcttgcgaaaatgtta |
1629724 |
T |
|
| Q |
301 |
caattttggaaaaccactgcggcattgcca |
330 |
Q |
| |
|
||||||||||| ||||||||||| |||||| |
|
|
| T |
1629725 |
caattttggaataccactgcggcgttgcca |
1629754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 10821273 - 10820944
Alignment:
| Q |
1 |
taattctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
10821273 |
taattctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacctagggggctgactaaagtgtccataaaagttt |
10821174 |
T |
|
| Q |
101 |
tcatcaccataactctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgaca |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10821173 |
tcatcaccataactcttgaatattgttgccaaggtcttcctaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgaca |
10821074 |
T |
|
| Q |
201 |
attgtggaatgaaattccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgtta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10821073 |
attgtggaatgaaattccagtgttttggaatggatcacctcgaccttgggcagtgatcatgttagcttggccatctaaaggttttcttgcgaaaatgttg |
10820974 |
T |
|
| Q |
301 |
caattttggaaaaccactgcggcattgcca |
330 |
Q |
| |
|
||||||||||| |||||||| || |||||| |
|
|
| T |
10820973 |
caattttggaataccactgcagcgttgcca |
10820944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 7 - 330
Target Start/End: Original strand, 1623255 - 1623578
Alignment:
| Q |
7 |
tcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatca |
106 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1623255 |
tcatactctccataatacaatgtatcttgagcaaaatctgtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatca |
1623354 |
T |
|
| Q |
107 |
ccataactctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgtg |
206 |
Q |
| |
|
|||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1623355 |
ccataactcttgagaattgttgccaaggccttcccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtg |
1623454 |
T |
|
| Q |
207 |
gaatgaaattccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattt |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||| |
|
|
| T |
1623455 |
gaatgaaattccagtgttttggaatgggtcaccacgaccttgggctgtgatcatgttagcttggccatccaaaggctttcttgcgaaaatgttacagttt |
1623554 |
T |
|
| Q |
307 |
tggaaaaccactgcggcattgcca |
330 |
Q |
| |
|
||||| || ||||| || |||||| |
|
|
| T |
1623555 |
tggaatactactgcagcgttgcca |
1623578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 18780943 - 18781272
Alignment:
| Q |
1 |
taattctcatactctccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttt |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
18780943 |
taattctcatactcgccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttt |
18781042 |
T |
|
| Q |
101 |
tcatcaccataactctcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgaca |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
18781043 |
tcatcaccataactcttgaatattgttgccaaggcctgcccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccataatttgaca |
18781142 |
T |
|
| Q |
201 |
attgtggaatgaaattccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgtta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
18781143 |
attgtggaatgaaattccagtgttttggaatgggtcacctcgaccttgggccgtgatcatgtttgcttggccatctaaaggctttcttgcgaaaatgtta |
18781242 |
T |
|
| Q |
301 |
caattttggaaaaccactgcggcattgcca |
330 |
Q |
| |
|
||||||||||| || |||||||| |||||| |
|
|
| T |
18781243 |
caattttggaacactactgcggcgttgcca |
18781272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 269
Target Start/End: Original strand, 12802541 - 12802777
Alignment:
| Q |
33 |
ttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatcaccataactctcgaatattgttgccaa |
132 |
Q |
| |
|
||||||||||| ||| | ||||||||||||||||| | || || || ||| | |||||||| | |||||| |||| |||||| || ||| |||||| |
|
|
| T |
12802541 |
ttgagcaaaattagtacctccccatggagaccaacccattggactgaccaaattatccatgaatgatttcatgaccacaactctagagtatctttgccag |
12802640 |
T |
|
| Q |
133 |
ggcctacccaagaaggttttgtacttgtcaacaacaggctttagatccgatgcagccctaatttgacaattgtggaatgaaattccagtgttttggaatg |
232 |
Q |
| |
|
|||| ||||||||||| ||| | || | ||||| ||||| | ||| | || |||||||| ||| | ||||| | ||||||||||||||||| |||| |
|
|
| T |
12802641 |
ggccggcccaagaaggtgttgaatttcccgacaacgggcttgaaatctggcgcggccctaatctgagagttgtgaatcgaaattccagtgttttgaaatg |
12802740 |
T |
|
| Q |
233 |
ggtcacctcgaccttgggctgtgatcatgttagcttg |
269 |
Q |
| |
|
||||| | ||||||||||| ||||||||||| ||||| |
|
|
| T |
12802741 |
ggtcatcacgaccttgggccgtgatcatgtttgcttg |
12802777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 8767130 - 8767090
Alignment:
| Q |
283 |
tttcttgcgaaaatgttacaattttggaaaaccactgcggc |
323 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || ||||| |
|
|
| T |
8767130 |
tttcttgcgaaaatgttacaattttgcaaaactaccgcggc |
8767090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University